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Investigating the Product Profiles and Structural Relationships of New Levansucrases with Conventional and Non-Conventional Substrates
- Source :
- International Journal of Molecular Sciences, International Journal of Molecular Sciences, MDPI, 2020, 21 (15), pp.5402. ⟨10.3390/ijms21155402⟩, International Journal of Molecular Sciences, Vol 21, Iss 5402, p 5402 (2020), Volume 21, Issue 15
- Publication Year :
- 2020
- Publisher :
- MDPI, 2020.
-
Abstract
- The synthesis of complex oligosaccharides is desired for their potential as prebiotics, and their role in the pharmaceutical and food industry. Levansucrase (LS, EC 2.4.1.10), a fructosyl-transferase, can catalyze the synthesis of these compounds. LS acquires a fructosyl residue from a donor molecule and performs a non-Lenoir transfer to an acceptor molecule, via &beta<br />(2&rarr<br />6)-glycosidic linkages. Genome mining was used to uncover new LS enzymes with increased transfructosylating activity and wider acceptor promiscuity, with an initial screening revealing five LS enzymes. The product profiles and activities of these enzymes were examined after their incubation with sucrose. Alternate acceptor molecules were also incubated with the enzymes to study their consumption. LSs from Gluconobacter oxydans and Novosphingobium aromaticivorans synthesized fructooligosaccharides (FOSs) with up to 13 units in length. Alignment of their amino acid sequences and substrate docking with homology models identified structural elements causing differences in their product spectra. Raffinose, over sucrose, was the preferred donor molecule for the LS from Vibrio natriegens, N. aromaticivorans, and Paraburkolderia graminis. The LSs examined were found to have wide acceptor promiscuity, utilizing monosaccharides, disaccharides, and two alcohols to a high degree.
- Subjects :
- 0301 basic medicine
Gluconobacter oxydans
Sucrose
Novosphingobium
Protein Conformation
homology modeling
Gene Expression
Oligosaccharides
Vibrio natriegens
acceptor specificity
01 natural sciences
Quantitative Biology - Quantitative Methods
Substrate Specificity
lcsh:Chemistry
chemistry.chemical_compound
Raffinose
lcsh:QH301-705.5
Spectroscopy
Quantitative Methods (q-bio.QM)
chemistry.chemical_classification
[SDV.BIBS] Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]
biology
alcohol
Burkholderiaceae
General Medicine
[SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]
Recombinant Proteins
Computer Science Applications
Molecular Docking Simulation
Sphingomonadaceae
prebiotic
Protein Binding
Stereochemistry
levansucrase
Fructose
Catalysis
Article
Inorganic Chemistry
03 medical and health sciences
[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology
Monosaccharide
Humans
[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology
fructooligosaccharide
Homology modeling
Amino Acid Sequence
Physical and Theoretical Chemistry
Molecular Biology
Vibrio
Binding Sites
010405 organic chemistry
Organic Chemistry
Levansucrase
Biomolecules (q-bio.BM)
biology.organism_classification
Acceptor
0104 chemical sciences
Fructans
Kinetics
030104 developmental biology
Enzyme
Prebiotics
chemistry
lcsh:Biology (General)
lcsh:QD1-999
Quantitative Biology - Biomolecules
Hexosyltransferases
Structural Homology, Protein
FOS: Biological sciences
Biocatalysis
fructosylation
Sequence Alignment
Subjects
Details
- Language :
- English
- ISSN :
- 14220067 and 16616596
- Volume :
- 21
- Issue :
- 15
- Database :
- OpenAIRE
- Journal :
- International Journal of Molecular Sciences
- Accession number :
- edsair.doi.dedup.....b5626ef88801ccf301e17583017a065a