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Power estimation for non-standardized multisite studies

Authors :
Till Sprenger
Massimo Filippi
David A. Hafler
Sara Llufriu
Gina Kirkish
Mona K. Beyer
Pablo Villoslada
Xavier Montalban
Sandra D'Alfonso
Anisha Keshavan
Philippe Demaerel
Claus Zimmer
Pradip M. Pattany
Mike P. Wattjes
Christiane Graetz
Ludwig Kappos
Alessandro Carriero
Jorge R. Oksenberg
Jacob L. McCauley
Roland G. Henry
Alyssa H. Zhu
Adriane Gröger
Michael Amann
An Goris
Laura Gaetano
Antje Bischof
Filippo Martinelli-Boneschi
Hanne F. Harbo
Sergiu Groppa
Alessandro Stecco
Stefano Magon
Margaret A. Pericak-Vance
Daniel Pelletier
Frauke Zipp
Regina Schlaeger
Alex Rovira
Nico Papinutto
Friedemann Paul
Albert Saiz
Maria A. Rocca
Isabelle Cournu-Rebeix
William A. Stern
Howard L. Weiner
Bernhard Hemmer
Russell T. Shinohara
Manuel Comabella
Bénédicte Dubois
Rohit Bakshi
Jason C. Crane
Vinzenz Fleischer
Bernard M. J. Uitdehaag
Jens Wuerfel
Stephen L. Hauser
Mark Mühlau
Kesshi M. Jordan
Bertrand Fontaine
Keshavan, A
Paul, F
Beyer, Mk
Zhu, Ah
Papinutto, N
Shinohara, Rt
Stern, W
Amann, M
Bakshi, R
Bischof, A
Carriero, A
Comabella, M
Crane, Jc
D'Alfonso, S
Demaerel, P
Dubois, B
Filippi, M
Fleischer, V
Fontaine, B
Gaetano, L
Goris, A
Graetz, C
Gröger, A
Groppa, S
Hafler, Da
Harbo, Hf
Hemmer, B
Jordan, K
Kappos, L
Kirkish, G
Llufriu, S
Magon, S
Martinelli-Boneschi, F
Mccauley, J
Montalban, X
Muhlau, M
Pelletier, D
Pattany, Pm
Pericak-Vance, M
Rebeix, I
Rocca, M
Rovira, A
Schlaeger, R
Saiz, A
Sprenger, T
Stecco, A
Uitdehaag, Bm
Villoslada, P
Wattjes, Mp
Weiner, H
Wuerfel, J
Zimmer, C
Zipp, F
International Multiple Sclerosis Genetics, Consortium
Hauser, S
Oksenberg, Jr
Henry, Rg
Bioengineering Graduate Program (joint degree with UCSF)
Department of Bioengineering [Berkeley]
University of California [Berkeley]
University of California-University of California-University of California [Berkeley]
University of California-University of California-University of California [San Francisco] (UCSF)
University of California
Department of Neurology [San Francisco]
University of California [San Francisco] (UCSF)
University of California-University of California
Max Delbrueck Centre for Molecular Medicine
NeuroCure Clinical Research Center and Clinical and Experimental Multiple Sclerosis Research Center
Charité - UniversitätsMedizin = Charité - University Hospital [Berlin]
Department of Radiology and Nuclear Medicine
Oslo University Hospital [Oslo]
Department of Biostatistics and Epidemiology [Philadelphia]
Perelman School of Medicine
University of Pennsylvania [Philadelphia]-University of Pennsylvania [Philadelphia]
Department of Neurology [Suisse]
University Hospital Basel [Basel]
Medical Image Analysis Center (MIAC AG)
Brigham and Women's Hospital [Boston]
Clinical Immunology
Department of Translational Medicine
UPO University
Vall d'Hebron University Hospital [Barcelona]
Department of Radiology and Biomedical Imaging [San Francisco]
Department of Health Sciences, UPO University
Department of Radiology[Leuven]
University Hospitals Leuven [Leuven]
Department of Neurosciences Leuven
University of Leuven K.U.Leuven
Institute of Experimental Neurology, Milan
University Medical Centre of the Johannes Gutenberg University Mainz
Focus Program Translational Neuroscience (FTN) and Immunotherapy (FZI)
University Medical Centre of the Johannes Gutenberg-University Mainz
Institut du Cerveau et de la Moëlle Epinière = Brain and Spine Institute (ICM)
Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut National de la Santé et de la Recherche Médicale (INSERM)-CHU Pitié-Salpêtrière [AP-HP]
Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Sorbonne Université (SU)-Assistance publique - Hôpitaux de Paris (AP-HP) (AP-HP)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)
Departments of Neurology and Immunobiology [Yale]
Yale University School of Medicine
Department of Neurology [Oslo]
Akershus University Hospital [Lørenskog]
Department Neurology of the Klinikum rechts der Isar
Technische Universität Munchen - Université Technique de Munich [Munich, Allemagne] (TUM)
Munich Cluster of Systems Neurology (SyNery)
Center for Neuroimmunology, Service of Neurology
Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS)
Neuroimaging Research Unit, Scientific Institute and University Hospital San Raffaele, Milan
John P. Hussman Institute for Human Genomics
University of Miami Leonard M. Miller School of Medicine (UMMSM)
TUM–Neuroimaging Center
Department of Radiology [Miami]
DKD Helios Klinik Wiesbaden
Section of Neuroradiology [Novara]
Maggiore Hospital
VU University Medical Center [Amsterdam]
Dept Neuroradiology [Munich]
Klinikums rechts der Isar
University of California [Berkeley] (UC Berkeley)
University of California (UC)-University of California (UC)-University of California [Berkeley] (UC Berkeley)
University of California (UC)-University of California (UC)-University of California [San Francisco] (UC San Francisco)
University of California (UC)
University of California [San Francisco] (UC San Francisco)
University of California (UC)-University of California (UC)
University of Pennsylvania-University of Pennsylvania
Johannes Gutenberg - Universität Mainz = Johannes Gutenberg University (JGU)
Yale School of Medicine [New Haven, Connecticut] (YSM)
Neurology
Amsterdam Neuroscience - Neuroinfection & -inflammation
Radiology and nuclear medicine
Source :
Keshavan, A, Paul, F, Beyer, M K, Zhu, A H, Papinutto, N, Shinohara, R T, Stern, W, Amann, M, Bakshi, R, Bischof, A, Carriero, A, Comabella, M, Crane, J C, D'Alfonso, S, Demaerel, P, Dubois, B, Filippi, M, Fleischer, V, Fontaine, B, Gaetano, L, Goris, A, Graetz, C, Gröger, A, Groppa, S, Hafler, D A, Harbo, H F, Hemmer, B, Jordan, K, Kappos, L, Kirkish, G, Llufriu, S, Magon, S, Martinelli-Boneschi, F, McCauley, J L, Montalban, X, Mühlau, M, Pelletier, D, Pattany, P M, Pericak-Vance, M, Cournu-Rebeix, I, Rocca, M A, Rovira, A, Schlaeger, R, Saiz, A, Sprenger, T, Stecco, A, Uitdehaag, B M J, Villoslada, P, Wattjes, M P, Weiner, H, Wuerfel, J, Zimmer, C, Zipp, F, Hauser, S L, Oksenberg, J R, Henry, R G & International Multiple Sclerosis Genetics Consortium, M S G C 2016, ' Power estimation for non-standardized multisite studies ', NeuroImage, vol. 134, pp. 281-294 . https://doi.org/10.1016/j.neuroimage.2016.03.051, NeuroImage, NeuroImage, Elsevier, 2016, 134, ⟨10.1016/j.neuroimage.2016.03.051⟩, NeuroImage, 2016, 134, ⟨10.1016/j.neuroimage.2016.03.051⟩, NeuroImage, 134, 281-294. Academic Press Inc., Keshavan, A; Paul, F; Beyer, MK; Zhu, AH; Papinutto, N; Shinohara, RT; et al.(2016). Power estimation for non-standardized multisite studies. NEUROIMAGE, 134, 281-294. doi: 10.1016/j.neuroimage.2016.03.051. UC San Francisco: Retrieved from: http://www.escholarship.org/uc/item/8fb1g9s7
Publication Year :
2016

Abstract

A concern for researchers planning multisite studies is that scanner and T1-weighted sequence-related biases on regional volumes could overshadow true effects, especially for studies with a heterogeneous set of scanners and sequences. Current approaches attempt to harmonize data by standardizing hardware, pulse sequences, and protocols, or by calibrating across sites using phantom-based corrections to ensure the same raw image intensities. We propose to avoid harmonization and phantom-based correction entirely. We hypothesized that the bias of estimated regional volumes is scaled between sites due to the contrast and gradient distortion differences between scanners and sequences. Given this assumption, we provide a new statistical framework and derive a power equation to define inclusion criteria for a set of sites based on the variability of their scaling factors. We estimated the scaling factors of 20 scanners with heterogeneous hardware and sequence parameters by scanning a single set of 12 subjects at sites across the United States and Europe. Regional volumes and their scaling factors were estimated for each site using Freesurfer's segmentation algorithm and ordinary least squares, respectively. The scaling factors were validated by comparing the theoretical and simulated power curves, performing a leave-one-out calibration of regional volumes, and evaluating the absolute agreement of all regional volumes between sites before and after calibration. Using our derived power equation, we were able to define the conditions under which harmonization is not necessary to achieve 80% power. This approach can inform choice of processing pipelines and outcome metrics for multisite studies based on scaling factor variability across sites, enabling collaboration between clinical and research institutions. publisher: Elsevier articletitle: Power estimation for non-standardized multisite studies journaltitle: NeuroImage articlelink: http://dx.doi.org/10.1016/j.neuroimage.2016.03.051 content_type: article copyright: © 2016 The Authors. Published by Elsevier Inc. ispartof: NeuroImage vol:134 pages:281-294 ispartof: location:United States status: published

Details

Language :
English
ISSN :
10538119 and 10959572
Database :
OpenAIRE
Journal :
Keshavan, A, Paul, F, Beyer, M K, Zhu, A H, Papinutto, N, Shinohara, R T, Stern, W, Amann, M, Bakshi, R, Bischof, A, Carriero, A, Comabella, M, Crane, J C, D'Alfonso, S, Demaerel, P, Dubois, B, Filippi, M, Fleischer, V, Fontaine, B, Gaetano, L, Goris, A, Graetz, C, Gröger, A, Groppa, S, Hafler, D A, Harbo, H F, Hemmer, B, Jordan, K, Kappos, L, Kirkish, G, Llufriu, S, Magon, S, Martinelli-Boneschi, F, McCauley, J L, Montalban, X, Mühlau, M, Pelletier, D, Pattany, P M, Pericak-Vance, M, Cournu-Rebeix, I, Rocca, M A, Rovira, A, Schlaeger, R, Saiz, A, Sprenger, T, Stecco, A, Uitdehaag, B M J, Villoslada, P, Wattjes, M P, Weiner, H, Wuerfel, J, Zimmer, C, Zipp, F, Hauser, S L, Oksenberg, J R, Henry, R G & International Multiple Sclerosis Genetics Consortium, M S G C 2016, ' Power estimation for non-standardized multisite studies ', NeuroImage, vol. 134, pp. 281-294 . https://doi.org/10.1016/j.neuroimage.2016.03.051, NeuroImage, NeuroImage, Elsevier, 2016, 134, ⟨10.1016/j.neuroimage.2016.03.051⟩, NeuroImage, 2016, 134, ⟨10.1016/j.neuroimage.2016.03.051⟩, NeuroImage, 134, 281-294. Academic Press Inc., Keshavan, A; Paul, F; Beyer, MK; Zhu, AH; Papinutto, N; Shinohara, RT; et al.(2016). Power estimation for non-standardized multisite studies. NEUROIMAGE, 134, 281-294. doi: 10.1016/j.neuroimage.2016.03.051. UC San Francisco: Retrieved from: http://www.escholarship.org/uc/item/8fb1g9s7
Accession number :
edsair.doi.dedup.....b470765031e3e0cc097a9cc3797e7461