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Polygenic prediction of educational attainment within and between families from genome-wide association analyses in 3 million individuals

Authors :
Okbay, Aysu
Wu, Yeda
Wang, Nancy
Jayashankar, Hariharan
Bennett, Michael
Nehzati, Seyed Moeen
Sidorenko, Julia
Kweon, Hyeokmoon
Goldman, Grant
Gjorgjieva, Tamara
Jiang, Yunxuan
Hicks, Barry
Tian, Chao
Hinds, David A.
Ahlskog, Rafael
Magnusson, Patrik K. E.
Oskarsson, Sven
Hayward, Caroline
Campbell, Archie
Porteous, David J.
Freese, Jeremy
Herd, Pamela
Agee, Michelle
Alipanahi, Babak
Auton, Adam
Bell, Robert K.
Bryc, Katarzyna
Elson, Sarah L.
Fontanillas, Pierre
Furlotte, Nicholas A.
Huber, Karen E.
Kleinman, Aaron
Litterman, Nadia K.
McCreight, Jennifer C.
McIntyre, Matthew H.
Mountain, Joanna L.
Northover, Carrie A. M.
Pitts, Steven J.
Sathirapongsasuti, J. Fah
Sazonova, Olga V.
Shelton, Janie F.
Shringarpure, Suyash
Tung, Joyce Y.
Vacic, Vladimir
Wilson, Catherine H.
Fontana, Mark Alan
Pers, Tune H.
Rietveld, Cornelius A.
Chen, Guo-Bo
Emilsson, Valur
Meddens, S. Fleur W.
Pickrell, Joseph K.
Thom, Kevin
Timshel, Pascal
de Vlaming, Ronald
Abdellaoui, Abdel
Ahluwalia, Tarunveer S.
Bacelis, Jonas
Baumbach, Clemens
Bjornsdottir, Gyda
Brandsma, Johannes H.
Concas, Maria Pina
Derringer, Jaime
Galesloot, Tessel E.
Girotto, Giorgia
Gupta, Richa
Hall, Leanne M.
Harris, Sarah E.
Hofer, Edith
Horikoshi, Momoko
Huffman, Jennifer E.
Kaasik, Kadri
Kalafati, Ioanna P.
Karlsson, Robert
Lahti, Jari
van der Lee, Sven J.
de Leeuw, Christiaan
Lind, Penelope A.
Lindgren, Karl-Oskar
Liu, Tian
Mangino, Massimo
Marten, Jonathan
Mihailov, Evelin
Miller, Michael B.
van der Most, Peter J.
Oldmeadow, Christopher
Payton, Antony
Pervjakova, Natalia
Peyrot, Wouter J.
Qian, Yong
Raitakari, Olli
Rueedi, Rico
Salvi, Erika
Schmidt, Börge
Schraut, Katharina E.
Shi, Jianxin
Smith, Albert V.
Poot, Raymond A.
Pourcain, Beate St
Teumer, Alexander
Thorleifsson, Gudmar
Verweij, Niek
Vuckovic, Dragana
Wellmann, Juergen
Westra, Harm-Jan
Yang, Jingyun
Zhao, Wei
Zhu, Zhihong
Alizadeh, Behrooz Z.
Amin, Najaf
Bakshi, Andrew
Baumeister, Sebastian E.
Biino, Ginevra
Bønnelykke, Klaus
Boyle, Patricia A.
Campbell, Harry
Cappuccio, Francesco P.
Davies, Gail
De Neve, Jan-Emmanuel
Deloukas, Panos
Demuth, Ilja
Ding, Jun
Eibich, Peter
Eisele, Lewin
Eklund, Niina
Evans, David M.
Faul, Jessica D.
Feitosa, Mary F.
Forstner, Andreas J.
Gandin, Ilaria
Gunnarsson, Bjarni
Halldórsson, Bjarni V.
Harris, Tamara B.
Heath, Andrew C.
Hocking, Lynne J.
Holliday, Elizabeth G.
Homuth, Georg
Horan, Michael A.
Hottenga, Jouke-Jan
de Jager, Philip L.
Joshi, Peter K.
Jugessur, Astanand
Kaakinen, Marika A.
Kähönen, Mika
Kanoni, Stavroula
Keltigangas-Järvinen, Liisa
Kiemeney, Lambertus A. L. M.
Kolcic, Ivana
Koskinen, Seppo
Kraja, Aldi T.
Kroh, Martin
Kutalik, Zoltan
Latvala, Antti
Launer, Lenore J.
Lebreton, Maël P.
Levinson, Douglas F.
Lichtenstein, Paul
Lichtner, Peter
Liewald, David C. M.
Loukola, Anu
Madden, Pamela A.
Mägi, Reedik
Mäki-Opas, Tomi
Marioni, Riccardo E.
Marques-Vidal, Pedro
Meddens, Gerardus A.
McMahon, George
Meisinger, Christa
Meitinger, Thomas
Milaneschi, Yusplitri
Milani, Lili
Montgomery, Grant W.
Myhre, Ronny
Nelson, Christopher P.
Nyholt, Dale R.
Ollier, William E. R.
Palotie, Aarno
Paternoster, Lavinia
Pedersen, Nancy L.
Petrovic, Katja E.
Räikkönen, Katri
Ring, Susan M.
Robino, Antonietta
Rostapshova, Olga
Rudan, Igor
Rustichini, Aldo
Salomaa, Veikko
Sanders, Alan R.
Sarin, Antti-Pekka
Schmidt, Helena
Scott, Rodney J.
Smith, Blair H.
Smith, Jennifer A.
Staessen, Jan A.
Steinhagen-Thiessen, Elisabeth
Strauch, Konstantin
Terracciano, Antonio
Tobin, Martin D.
Ulivi, Sheila
Vaccargiu, Simona
Quaye, Lydia
van Rooij, Frank J. A.
Venturini, Cristina
Vinkhuyzen, Anna A. E.
Völker, Uwe
Völzke, Henry
Vonk, Judith M.
Vozzi, Diego
Waage, Johannes
Ware, Erin B.
Willemsen, Gonneke
Attia, John R.
Bennett, David A.
Berger, Klaus
Bertram, Lars
Bisgaard, Hans
Boomsma, Dorret I.
Borecki, Ingrid B.
Bültmann, Ute
Chabris, Christopher F.
Cucca, Francesco
Cusi, Daniele
Deary, Ian J.
Dedoussis, George V.
van Duijn, Cornelia M.
Eriksson, Johan G.
Franke, Barbara
Franke, Lude
Gasparini, Paolo
Gejman, Pablo V.
Gieger, Christian
Grabe, Hans-Jörgen
Gratten, Jacob
Groenen, Patrick J. F.
Gudnason, Vilmundur
van der Harst, Pim
Hoffmann, Wolfgang
Hyppönen, Elina
Iacono, William G.
Jacobsson, Bo
Järvelin, Marjo-Riitta
Jöckel, Karl-Heinz
Kaprio, Jaakko
Kardia, Sharon L. R.
Lehtimäki, Terho
Lehrer, Steven F.
Martin, Nicholas G.
McGue, Matt
Metspalu, Andres
Pendleton, Neil
Penninx, Brenda W. J. H.
Perola, Markus
Pirastu, Nicola
Pirastu, Mario
Polasek, Ozren
Posthuma, Danielle
Power, Christine
Province, Michael A.
Samani, Nilesh J.
Schlessinger, David
Schmidt, Reinhold
Sørensen, Thorkild I. A.
Spector, Tim D.
Stefansson, Kari
Thorsteinsdottir, Unnur
Thurik, A. Roy
Timpson, Nicholas J.
Tiemeier, Henning
Uitterlinden, André G.
Vitart, Veronique
Vollenweider, Peter
Weir, David R.
Wilson, James F.
Wright, Alan F.
Conley, Dalton C.
Krueger, Robert F.
Smith, George Davey
Hofman, Albert
Laibson, David I.
Medland, Sarah E.
Yang, Jian
Esko, Tõnu
Watson, Chelsea
Jala, Jonathan
Conley, Dalton
Koellinger, Philipp D.
Johannesson, Magnus
Laibson, David
Meyer, Michelle N.
Lee, James J.
Kong, Augustine
Yengo, Loic
Cesarini, David
Turley, Patrick
Visscher, Peter M.
Beauchamp, Jonathan P.
Benjamin, Daniel J.
Young, Alexander I.
Economics
Tinbergen Institute
Amsterdam Neuroscience - Complex Trait Genetics
23andMe Research Team [Member of the MPIB: Tian Liu]
Social Science Genetic Association Consortium
Okbay, Aysu
Wu, Yeda
Wang, Nancy
Jayashankar, Hariharan
Bennett, Michael
Moeen Nehzati, Seyed
Sidorenko, Julia
Kweon, Hyeokmoon
Goldman, Grant
Gjorgjieva, Tamara
Jiang, Yunxuan
Hicks, Barry
Tian, Chao
Hinds, David A.
Ahlskog, Rafael
Magnusson, Patrik K. E.
Oskarsson, Sven
Hayward, Caroline
Campbell, Archie
Porteous, David J.
Freese, Jeremy
Herd, Pamela
Agee, Michelle
Alipanahi, Babak
Auton, Adam
Bell, Robert K.
Bryc, Katarzyna
Elson, Sarah L.
Fontanillas, Pierre
Furlotte, Nicholas A.
Huber, Karen E.
Kleinman, Aaron
Litterman, Nadia K.
Mccreight, Jennifer C.
Mcintyre, Matthew H.
Mountain, Joanna L.
Northover, Carrie A. M.
Pitts, Steven J.
Fah Sathirapongsasuti, J.
Sazonova, Olga V.
Shelton, Janie F.
Shringarpure, Suyash
Tung, Joyce Y.
Vacic, Vladimir
Wilson, Catherine H.
Alan Fontana, Mark
Pers, Tune H.
Rietveld, Cornelius A.
Chen, Guo-Bo
Emilsson, Valur
Meddens, S. Fleur W.
Pickrell, Joseph K.
Thom, Kevin
Timshel, Pascal
de Vlaming, Ronald
Abdellaoui, Abdel
Ahluwalia, Tarunveer S.
Bacelis, Jona
Baumbach, Clemen
Bjornsdottir, Gyda
Brandsma, Johannes H.
Concas, MARIA PINA
Derringer, Jaime
Galesloot, Tessel E.
Girotto, Giorgia
Gupta, Richa
Hall, Leanne M.
Harris, Sarah E.
Hofer, Edith
Horikoshi, Momoko
Huffman, Jennifer E.
Kaasik, Kadri
Kalafati, Ioanna P.
Karlsson, Robert
Lahti, Jari
van der Lee, Sven J.
de Leeuw, Christiaan
Lind, Penelope A.
Lindgren, Karl-Oskar
Liu, Tian
Mangino, Massimo
Marten, Jonathan
Mihailov, Evelin
Miller, Michael B.
van der Most, Peter J.
Oldmeadow, Christopher
Payton, Antony
Pervjakova, Natalia
Peyrot, Wouter J.
Qian, Yong
Raitakari, Olli
Rueedi, Rico
Salvi, Erika
Schmidt, B??rge
Schraut, Katharina E.
Shi, Jianxin
Smith, Albert V.
Poot, Raymond A.
St Pourcain, Beate
Teumer, Alexander
Thorleifsson, Gudmar
Verweij, Niek
Vuckovic, Dragana
Wellmann, Juergen
Westra, Harm-Jan
Yang, Jingyun
Zhao, Wei
Zhu, Zhihong
Alizadeh, Behrooz Z.
Amin, Najaf
Bakshi, Andrew
Baumeister, Sebastian E.
Biino, Ginevra
B??nnelykke, Klau
Boyle, Patricia A.
Campbell, Harry
Cappuccio, Francesco P.
Davies, Gail
De Neve, Jan-Emmanuel
Deloukas, Pano
Demuth, Ilja
Ding, Jun
Eibich, Peter
Eisele, Lewin
Eklund, Niina
Evans, David M.
Faul, Jessica D.
Feitosa, Mary F.
Forstner, Andreas J.
Gandin, Ilaria
Gunnarsson, Bjarni
Halld??rsson, Bjarni V.
Harris, Tamara B.
Heath, Andrew C.
Hocking, Lynne J.
Holliday, Elizabeth G.
Homuth, Georg
Horan, Michael A.
Hottenga, Jouke-Jan
de Jager, Philip L.
Joshi, Peter K.
Jugessur, Astanand
Kaakinen, Marika A.
K??h??nen, Mika
Kanoni, Stavroula
Keltigangas-J??rvinen, Liisa
Kiemeney, Lambertus A. L. M.
Kolcic, Ivana
Koskinen, Seppo
Kraja, Aldi T.
Kroh, Martin
Kutalik, Zoltan
Latvala, Antti
Launer, Lenore J.
Lebreton, Ma??l P.
Levinson, Douglas F.
Lichtenstein, Paul
Lichtner, Peter
Liewald, David C. M.
Loukola, Anu
Madden, Pamela A.
M??gi, Reedik
M??ki-Opas, Tomi
Marioni, Riccardo E.
Marques-Vidal, Pedro
Meddens, Gerardus A.
Mcmahon, George
Meisinger, Christa
Meitinger, Thoma
Milaneschi, Yusplitri
Milani, Lili
Montgomery, Grant W.
Myhre, Ronny
Nelson, Christopher P.
Nyholt, Dale R.
Ollier, William E. R.
Palotie, Aarno
Paternoster, Lavinia
Pedersen, Nancy L.
Petrovic, Katja E.
R??ikk??nen, Katri
Ring, Susan M.
Robino, Antonietta
Rostapshova, Olga
Rudan, Igor
Rustichini, Aldo
Salomaa, Veikko
Sanders, Alan R.
Sarin, Antti-Pekka
Schmidt, Helena
Scott, Rodney J.
Smith, Blair H.
Smith, Jennifer A.
Staessen, Jan A.
Steinhagen-Thiessen, Elisabeth
Strauch, Konstantin
Terracciano, Antonio
Tobin, Martin D.
Ulivi, Sheila
Vaccargiu, Simona
Quaye, Lydia
van Rooij, Frank J. A.
Venturini, Cristina
Vinkhuyzen, Anna A. E.
V??lker, Uwe
V??lzke, Henry
Vonk, Judith M.
Vozzi, Diego
Waage, Johanne
Ware, Erin B.
Willemsen, Gonneke
Attia, John R.
Bennett, David A.
Berger, Klau
Bertram, Lar
Bisgaard, Han
Boomsma, Dorret I.
Borecki, Ingrid B.
B??ltmann, Ute
Chabris, Christopher F.
Cucca, Francesco
Cusi, Daniele
Deary, Ian J.
Dedoussis, George V.
van Duijn, Cornelia M.
Eriksson, Johan G.
Franke, Barbara
Franke, Lude
Gasparini, Paolo
Gejman, Pablo V.
Gieger, Christian
Grabe, Hans-J??rgen
Gratten, Jacob
Groenen, Patrick J. F.
Gudnason, Vilmundur
van der Harst, Pim
Hoffmann, Wolfgang
Hypp??nen, Elina
Iacono, William G.
Jacobsson, Bo
J??rvelin, Marjo-Riitta
J??ckel, Karl-Heinz
Kaprio, Jaakko
Kardia, Sharon L. R.
Lehtim??ki, Terho
Lehrer, Steven F.
Martin, Nicholas G.
Mcgue, Matt
Metspalu, Andre
Pendleton, Neil
Penninx, Brenda W. J. H.
Perola, Marku
Pirastu, Nicola
Pirastu, Mario
Polasek, Ozren
Posthuma, Danielle
Power, Christine
Province, Michael A.
Samani, Nilesh J.
Schlessinger, David
Schmidt, Reinhold
S??rensen, Thorkild I. A.
Spector, Tim D.
Stefansson, Kari
Thorsteinsdottir, Unnur
Roy Thurik, A.
Timpson, Nicholas J.
Tiemeier, Henning
Uitterlinden, Andr?? G.
Vitart, Veronique
Vollenweider, Peter
Weir, David R.
Wilson, James F.
Wright, Alan F.
Conley, Dalton C.
Krueger, Robert F.
Davey Smith, George
Hofman, Albert
Laibson, David I.
Medland, Sarah E.
Yang, Jian
Esko, T??nu
Watson, Chelsea
Jala, Jonathan
Conley, Dalton
Koellinger, Philipp D.
Johannesson, Magnu
Laibson, David
Meyer, Michelle N.
Lee, James J.
Kong, Augustine
Yengo, Loic
Cesarini, David
Turley, Patrick
Visscher, Peter M.
Beauchamp, Jonathan P.
Benjamin, Daniel J.
Young, Alexander I.
VU University medical center
Psychiatry
Amsterdam Neuroscience - Mood, Anxiety, Psychosis, Stress & Sleep
Human genetics
Amsterdam Neuroscience - Compulsivity, Impulsivity & Attention
APH - Mental Health
APH - Digital Health
Schmidt, Börge (Beitragende*r)
Eisele, Lewin (Beitragende*r)
Jöckel, Karl-Heinz (Beitragende*r)
Life Course Epidemiology (LCE)
Real World Studies in PharmacoEpidemiology, -Genetics, -Economics and -Therapy (PEGET)
Groningen Research Institute for Asthma and COPD (GRIAC)
Public Health Research (PHR)
Stem Cell Aging Leukemia and Lymphoma (SALL)
Groningen Institute for Gastro Intestinal Genetics and Immunology (3GI)
Cardiovascular Centre (CVC)
Adult Psychiatry
Applied Economics
Epidemiology
Cell biology
Econometrics
Erasmus School of Economics
Child and Adolescent Psychiatry / Psychology
Internal Medicine
Department of Public Health
Institute for Molecular Medicine Finland
Department of Psychology and Logopedics
Doctoral Programme in Human Behaviour
Doctoral Programme in Cognition, Learning, Instruction and Communication
Department of Diagnostics and Therapeutics
Doctoral Programme Brain & Mind
Doctoral Programme in Population Health
HUSLAB
Research Programs Unit
Centre of Excellence in Complex Disease Genetics
Aarno Palotie / Principal Investigator
Genomics of Neurological and Neuropsychiatric Disorders
Doctoral Programme in Integrative Life Science
Doctoral Programme in Clinical Research
Department of General Practice and Primary Health Care
Johan Eriksson / Principal Investigator
Doctoral Programme in Oral Sciences
Clinicum
Doctoral Programme in Biomedicine
Source :
2022, ' Polygenic prediction of educational attainment within and between families from genome-wide association analyses in 3 million individuals ', Nature Genetics, vol. 54, no. 4, pp. 437-449 . https://doi.org/10.1038/s41588-022-01016-z, Okbay, A, Wu, Y, Wang, N, Jayashankar, H, Bennett, M, Nehzati, S M, Sidorenko, J, Kweon, H, Goldman, G, Gjorgjieva, T, Jiang, Y, Hicks, B, Tian, C, Hinds, D A, Ahlskog, R, Magnusson, P K E, Oskarsson, S, Hayward, C, Campbell, A, Porteous, D J, Freese, J, Herd, P, Agee, M, Alipanahi, B, Auton, A, Bell, R K, Bryc, K, Elson, S L, Fontanillas, P, Furlotte, N A, Hinds, D A, Huber, K E, Kleinman, A, Litterman, N K, McCreight, J C, McIntyre, M H, Mountain, J L, Northover, C A M, Pitts, S J, Sathirapongsasuti, J F, Sazonova, O V, Shelton, J F, Pers, T H, Timshel, P, Ahluwalia, T S, Bønnelykke, K, Bisgaard, H, Sørensen, T I A, 23andMe Research Team, Social Science Genetic Association Consortium & LifeLines Cohort Study 2022, ' Polygenic prediction of educational attainment within and between families from genome-wide association analyses in 3 million individuals ', Nature Genetics, vol. 54, no. 4, pp. 437-449 . https://doi.org/10.1038/s41588-022-01016-z, Nature genetics, 54(4), 437-449. Nature Publishing Group, Nature Genetics, 23Andme Research Team & Social Science Genetic Association Consortium 2022, ' Polygenic prediction of educational attainment within and between families from genome-wide association analyses in 3 million individuals ', Nature genetics, vol. 54, no. 4, pp. 437-449 . https://doi.org/10.1038/s41588-022-01016-z, Nature Genetics, 54, 437-449, Nature Genetics, 54(4), 437-449. Nature Publishing Group, 23andMe Research team, Social Science Genetic Association Consortium & Lifelines Cohort Study 2022, ' Polygenic prediction of educational attainment within and between families from genome-wide association analyses in 3 million individuals ', Nature Genetics, vol. 54, no. 4, pp. 437-449 . https://doi.org/10.1038/s41588-022-01016-z
Publication Year :
2022

Abstract

We conduct a genome-wide association study (GWAS) of educational attainment (EA) in a sample of similar to 3 million individuals and identify 3,952 approximately uncorrelated genome-wide-significant single-nucleotide polymorphisms (SNPs). A genome-wide polygenic predictor, or polygenic index (PGI), explains 12-16% of EA variance and contributes to risk prediction for ten diseases. Direct effects (i.e., controlling for parental PGIs) explain roughly half the PGI's magnitude of association with EA and other phenotypes. The correlation between mate-pair PGIs is far too large to be consistent with phenotypic assortment alone, implying additional assortment on PGI-associated factors. In an additional GWAS of dominance deviations from the additive model, we identify no genome-wide-significant SNPs, and a separate X-chromosome additive GWAS identifies 57. Karl-Oskar Lindgren ingår i gruppen Social Science Genetic Association Consortium

Details

Language :
English
ISSN :
10614036
Database :
OpenAIRE
Journal :
2022, ' Polygenic prediction of educational attainment within and between families from genome-wide association analyses in 3 million individuals ', Nature Genetics, vol. 54, no. 4, pp. 437-449 . https://doi.org/10.1038/s41588-022-01016-z, Okbay, A, Wu, Y, Wang, N, Jayashankar, H, Bennett, M, Nehzati, S M, Sidorenko, J, Kweon, H, Goldman, G, Gjorgjieva, T, Jiang, Y, Hicks, B, Tian, C, Hinds, D A, Ahlskog, R, Magnusson, P K E, Oskarsson, S, Hayward, C, Campbell, A, Porteous, D J, Freese, J, Herd, P, Agee, M, Alipanahi, B, Auton, A, Bell, R K, Bryc, K, Elson, S L, Fontanillas, P, Furlotte, N A, Hinds, D A, Huber, K E, Kleinman, A, Litterman, N K, McCreight, J C, McIntyre, M H, Mountain, J L, Northover, C A M, Pitts, S J, Sathirapongsasuti, J F, Sazonova, O V, Shelton, J F, Pers, T H, Timshel, P, Ahluwalia, T S, Bønnelykke, K, Bisgaard, H, Sørensen, T I A, 23andMe Research Team, Social Science Genetic Association Consortium & LifeLines Cohort Study 2022, ' Polygenic prediction of educational attainment within and between families from genome-wide association analyses in 3 million individuals ', Nature Genetics, vol. 54, no. 4, pp. 437-449 . https://doi.org/10.1038/s41588-022-01016-z, Nature genetics, 54(4), 437-449. Nature Publishing Group, Nature Genetics, 23Andme Research Team & Social Science Genetic Association Consortium 2022, ' Polygenic prediction of educational attainment within and between families from genome-wide association analyses in 3 million individuals ', Nature genetics, vol. 54, no. 4, pp. 437-449 . https://doi.org/10.1038/s41588-022-01016-z, Nature Genetics, 54, 437-449, Nature Genetics, 54(4), 437-449. Nature Publishing Group, 23andMe Research team, Social Science Genetic Association Consortium & Lifelines Cohort Study 2022, ' Polygenic prediction of educational attainment within and between families from genome-wide association analyses in 3 million individuals ', Nature Genetics, vol. 54, no. 4, pp. 437-449 . https://doi.org/10.1038/s41588-022-01016-z
Accession number :
edsair.doi.dedup.....b2f0bbe92c3b9b0da9a12e7d0248be6c