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Evolution of the Rho Family of Ras-Like GTPases in Eukaryotes

Authors :
Emmanuel Vignal
Philippe Fort
Sandrine Faure
Anthony Boureux
Centre de recherche en Biologie Cellulaire (CRBM)
Université Montpellier 2 - Sciences et Techniques (UM2)-Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Université Montpellier 1 (UM1)
Institut de génétique humaine (IGH)
Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)
Centre de recherches de biochimie macromoléculaire (CRBM)
Université Montpellier 1 (UM1)-Université Montpellier 2 - Sciences et Techniques (UM2)-IFR122-Centre National de la Recherche Scientifique (CNRS)
Unité Mixte de Recherches sur les Herbivores - UMR 1213 (UMRH)
VetAgro Sup - Institut national d'enseignement supérieur et de recherche en alimentation, santé animale, sciences agronomiques et de l'environnement (VAS)-AgroSup Dijon - Institut National Supérieur des Sciences Agronomiques, de l'Alimentation et de l'Environnement-Institut National de la Recherche Agronomique (INRA)
Physiologie & médecine expérimentale du Cœur et des Muscles [U 1046] (PhyMedExp)
Université de Montpellier (UM)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)
Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Montpellier (UM)-Centre National de la Recherche Scientifique (CNRS)
Philippe, Fort
Source :
Molecular Biology and Evolution, Molecular Biology and Evolution, Oxford University Press (OUP), 2007, 24 (1), pp.203-16. ⟨10.1093/molbev/msl145⟩, Molecular Biology and Evolution, Oxford University Press (OUP), 2007, 24 (1), pp.203-216. ⟨10.1093/molbev/msl145⟩, Molecular Biology and Evolution, 2007, 24 (1), pp.203-216. ⟨10.1093/molbev/msl145⟩
Publication Year :
2006
Publisher :
Oxford University Press (OUP), 2006.

Abstract

International audience; GTPases of the Rho family are molecular switches that play important roles in converting and amplifying external signals into cellular effects. Originally de onstrated to control the dynamics of the F-actin cytoskeleton, Rho GTPases have been implicated in many basic cellular processes that influence cell proliferation, differentiation, motility, adhesion, survival, or secretion. To elucidate the evolutionary history of the Rho family, we have analyzed over 20 species covering major eukaryotic clades from unicellular organisms to mammals, including platypus and opossum, and have reconstructed the ontogeny and the chronology of emergence of the different subfamilies. Our data establish that the 20 mammalian Rho members are structured into 8 subfamilies, among which Rac is the founder of the whole family. Rho, Cdc42, RhoUV, and RhoBTB subfamilies appeared before Coelomates and RhoJQ, Cdc42 isoforms, RhoDF, and Rnd emerged in chordates. In vertebrates, gene duplications and retrotranspositions increased the size of each chordate Rho subfamily, whereas RhoH, the last subfamily, arose probably by horizontal gene transfer. Rac1b, a Rac1 isoform generated by alternative splicing, emerged in amniotes, and RhoD, only in therians. Analysis of Rho mRNA expression patterns in mouse tissues shows that recent subfamilies have tissue-specific and low-level expression that supports their implication only in narrow time windows or in differentiated metabolic functions. These findings give a comprehensive view of the evolutionary canvas of the Rho family and provide guides for future structure and evolution studies of other components of Rho signaling pathways, in particular regulators of the RhoGEF family.

Subjects

Subjects :
rho GTP-Binding Proteins
Subfamily
MESH: Plants
[SDV.BC.BC]Life Sciences [q-bio]/Cellular Biology/Subcellular Processes [q-bio.SC]
MESH: Amino Acid Sequence
CDC42
GTPase
[SDV.BBM.BM] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology
[SDV.BID.SPT]Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy
0302 clinical medicine
Gene Duplication
MESH: Pseudogenes
MESH: Animals
MESH: Phylogeny
MESH: Vertebrates
Phylogeny
ComputingMilieux_MISCELLANEOUS
MESH: Evolution, Molecular
0303 health sciences
MESH: Gene Duplication
[SDV.BDD.EO] Life Sciences [q-bio]/Development Biology/Embryology and Organogenesis
cytoskeleton
Plants
Cell biology
030220 oncology & carcinogenesis
Vertebrates
Pseudogenes
MESH: Fungi
Pseudogene
Molecular Sequence Data
MESH: Sequence Alignment
[SDV.CAN]Life Sciences [q-bio]/Cancer
Chordate
RAC1
Biology
Article
Evolution, Molecular
03 medical and health sciences
MESH: Invertebrates
[SDV.CAN] Life Sciences [q-bio]/Cancer
Rho
[SDV.BID.SPT] Life Sciences [q-bio]/Biodiversity/Systematics, Phylogenetics and taxonomy
evolution
[SDV.BC.BC] Life Sciences [q-bio]/Cellular Biology/Subcellular Processes [q-bio.SC]
Genetics
Animals
Humans
cell signaling
[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology
Amino Acid Sequence
RhoBTB
Molecular Biology
Ecology, Evolution, Behavior and Systematics
030304 developmental biology
MESH: Molecular Sequence Data
MESH: Humans
Alternative splicing
Fungi
[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology
MESH: rho GTP-Binding Proteins
biology.organism_classification
Invertebrates
[SDV.BDD.EO]Life Sciences [q-bio]/Development Biology/Embryology and Organogenesis
Sequence Alignment

Details

ISSN :
15371719 and 07374038
Volume :
24
Database :
OpenAIRE
Journal :
Molecular Biology and Evolution
Accession number :
edsair.doi.dedup.....adf9e3a79211b5abfaecbe7269965777