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Steeper spatial scaling patterns of subsoil microbiota are shaped by deterministic assembly process

Authors :
Ye Deng
Kai Feng
Arthur Escalas
Zhujun Wang
Xi Peng
Danrui Wang
Shang Wang
Qing He
Xiongfeng Du
Yueni Wu
Shuzhen Li
Shandong University
Tsinghua University [Beijing] (THU)
Molécules de Communication et Adaptation des Micro-organismes (MCAM)
Muséum national d'Histoire naturelle (MNHN)-Centre National de la Recherche Scientifique (CNRS)
MARine Biodiversity Exploitation and Conservation (UMR MARBEC)
Centre National de la Recherche Scientifique (CNRS)-Université de Montpellier (UM)-Institut Français de Recherche pour l'Exploitation de la Mer (IFREMER)-Institut de Recherche pour le Développement (IRD)
Source :
Molecular Ecology (0962-1083) (Wiley / Blackwell), 2021-02, Vol. 30, N. 4, P. 1072-1085, Molecular Ecology, Molecular Ecology, Wiley, 2020, ⟨10.1111/mec.15777⟩
Publication Year :
2019

Abstract

Place: Hoboken Publisher: Wiley WOS:000601909000001; Although many studies have investigated the spatial scaling of microbial communities living in surface soils, very little is known about the patterns within deeper strata, nor is the mechanism behind them. Here, we systematically assessed spatial scaling of prokaryotic biodiversity within three different strata (Upper: 0-20 cm, Middle: 20-40 cm, and Substratum: 40-100 cm) in a typical grassland by examining both distance-decay (DDRs) and species-area relationships (SARs), taxonomically and phylogenetically, as well as community assembly processes. Each layer exhibited significant biogeographic patterns in both DDR and SAR (p \textless .05), with taxonomic turnover rates higher than phylogenetic ones. Specifically, the spatial turnover rates, beta and z values, respectively, ranged from 0.016 +/- 0.005 to 0.023 +/- 0.005 and 0.065 +/- 0.002 to 0.077 +/- 0.004 across soil strata, and both increased with depth. Moreover, the prokaryotic community in grassland soils assembled mainly according to deterministic rather than stochastic mechanisms. By using normalized stochasticity ratio (NST) based on null model, the relative importance of deterministic ratios increased from 48.0 to 63.3% from Upper to Substratum, meanwhile a phylogenetic based method revealed average beta NTI also increased with depth, from -5.29 to 19.5. Using variation partitioning and distance approaches, both geographic distance and soil properties were found to strongly affect biodiversity structure, the proportions increasing with depth, but spatial distance was always the main underlying factor. These indicated increasingly deterministic proportions in accelerating turnover rates for spatial assembly of prokaryotic biodiversity. Our study provided new insights on biogeography in different strata, revealing importance of assembly patterns and mechanisms of prokaryote communities in below-surface soils.

Details

ISSN :
1365294X and 09621083
Volume :
30
Issue :
4
Database :
OpenAIRE
Journal :
Molecular ecologyREFERENCES
Accession number :
edsair.doi.dedup.....acadd4e4246d282c459f8547c990c036
Full Text :
https://doi.org/10.1111/mec.15777⟩