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Transcriptome Analysis Revealed Changes of Multiple Genes Involved in Haliotis discus hannai Innate Immunity during Vibrio parahemolyticus Infection
- Source :
- PLoS ONE, PLOS ONE(11): 4, PLoS ONE, Vol 11, Iss 4, p e0153474 (2016)
- Publication Year :
- 2016
- Publisher :
- Public Library of Science, 2016.
-
Abstract
- Abalone (Haliotis discus hannai) is one of the most valuable marine aquatic species in Korea, Japan and China. Tremendous exposure to bacterial infection is common in aquaculture environment, especially by Vibrio sp. infections. It’s therefore necessary and urgent to understand the mechanism of H. discus hannai host defense against Vibrio parahemolyticus infection. However studies on its immune system are hindered by the lack of genomic resources. In the present study, we sequenced the transcriptome of control and bacterial challenged H. discus hannai tissues. Totally, 138 MB of reference transcriptome were obtained from de novo assembly of 34 GB clean bases from ten different libraries and annotated with the biological terms (GO and KEGG). A total of 10,575 transcripts exhibiting the differentially expression at least one pair of comparison and the functional annotations highlight genes related to immune response, cell adhesion, immune regulators, redox molecules and mitochondrial coding genes. Mostly, these groups of genes were dominated in hemocytes compared to other tissues. This work is a prerequisite for the identification of those physiological traits controlling H. discus hannai ability to survive against Vibrio infection.
- Subjects :
- 0301 basic medicine
Hemocytes
Gastropoda
lcsh:Medicine
Gene Expression
Animal Diseases
Transcriptome
White Blood Cells
Database and Informatics Methods
Animal Cells
Medicine and Health Sciences
lcsh:Science
Immune Response
Genetics
Multidisciplinary
biology
Gene Ontologies
RNA sequencing
04 agricultural and veterinary sciences
Genomics
Host-Pathogen Interactions
Cellular Types
Transcriptome Analysis
Sequence Analysis
Research Article
Immune Cells
Immunology
Sequence Databases
Research and Analysis Methods
Real-Time Polymerase Chain Reaction
03 medical and health sciences
Vibrio Infections
Haliotis discus
Animals
KEGG
Molecular Biology Techniques
Sequencing Techniques
Gene
Molecular Biology
Innate immune system
Blood Cells
Sequence Assembly Tools
Gene Expression Profiling
lcsh:R
Biology and Life Sciences
Computational Biology
Reproducibility of Results
Cell Biology
biology.organism_classification
Genome Analysis
Vibrio
Immunity, Innate
Gene expression profiling
030104 developmental biology
Biological Databases
Gene Expression Regulation
Genome, Mitochondrial
040102 fisheries
0401 agriculture, forestry, and fisheries
lcsh:Q
Subjects
Details
- Language :
- English
- ISSN :
- 19326203
- Volume :
- 11
- Issue :
- 4
- Database :
- OpenAIRE
- Journal :
- PLoS ONE
- Accession number :
- edsair.doi.dedup.....a6fd3cfa68e6fa74abddcaecca41b970