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The complete chloroplast genome sequence of Kadsura interior
- Source :
- Mitochondrial DNA. Part B, Resources, article-version (VoR) Version of Record
- Publication Year :
- 2020
- Publisher :
- Informa UK Limited, 2020.
-
Abstract
- The first complete chloroplast genome (cpDNA) sequence of Kadsura interior was determined from Illumina HiSeq pair-end sequencing data in this study. The cpDNA is 153,201 bp in length, contains a large single-copy region (LSC) of 85,774 bp and a small single-copy region (SSC) of 18,077 bp, which were separated by a pair of inverted repeats (IR) regions of 24,673 bp each. The genome contains 129 genes, including 85 protein-coding genes, 8 ribosomal RNA genes, and 37 transfer RNA genes. The overall GC content of the whole genome is 39.6%, . The further phylogenomic analysis showed that K. interior and Kadsura coccinea clustered in a clade in Schisandraceae family.
- Subjects :
- 0106 biological sciences
0301 basic medicine
Whole genome sequencing
biology
phylogenetic analysis
Sequencing data
Kadsura interior
Illumina sequencing
Computational biology
biology.organism_classification
010603 evolutionary biology
01 natural sciences
Genome
Chloroplast
03 medical and health sciences
030104 developmental biology
chloroplast
Chloroplast DNA
Genetics
Kadsura
Molecular Biology
Mitogenome Announcement
Illumina dye sequencing
Research Article
Sequence (medicine)
Subjects
Details
- ISSN :
- 23802359
- Volume :
- 5
- Database :
- OpenAIRE
- Journal :
- Mitochondrial DNA Part B
- Accession number :
- edsair.doi.dedup.....a1b7f78da17126e696a397a906aa6e5f
- Full Text :
- https://doi.org/10.1080/23802359.2019.1710297