Tailor-made multiple sequence alignments using the PRALINE 2 alignment toolkit

Authors :: K. Anton Feenstra
Jaap Heringa
Wan Fokkink
Atze J van der Ploeg
Maurits J. J. Dijkstra
Sanne Abeln
Computer Science
Theoretical Computer Science
Integrative Bioinformatics
Network Institute
AIMMS
Bioinformatics
Source :: Bioinformatics, Dijkstra, M J J, van der Ploeg, A J, Feenstra, K A, Fokkink, W J, Abeln, S & Heringa, J 2019, ' Tailor-made multiple sequence alignments using the PRALINE 2 alignment toolkit ', Bioinformatics (Oxford, England), vol. 35, no. 24, pp. 5315-5317 . https://doi.org/10.1093/bioinformatics/btz572, Bioinformatics (Oxford, England), 35(24), 5315-5317. Oxford University Press
Publication Year :: 2019
Publisher :: Oxford University Press, 2019.
Abstract: Summary PRALINE 2 is a toolkit for custom multiple sequence alignment workflows. It can be used to incorporate sequence annotations, such as secondary structure or (DNA) motifs, into the alignment scoring, as well as to customize many other aspects of a progressive multiple alignment workflow. Availability and implementation PRALINE 2 is implemented in Python and available as open source software on GitHub: https://github.com/ibivu/PRALINE/.

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