Back to Search Start Over

The ribosome prohibits the G•U wobble geometry at the first position of the codon–anticodon helix

Authors :
Gulnara Yusupova
A. Rozov
Eric Westhof
Marat Yusupov
Institut de Génétique et de Biologie Moléculaire et Cellulaire (IGBMC)
Université de Strasbourg (UNISTRA)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)
Architecture et Réactivité de l'ARN (ARN)
Institut de biologie moléculaire et cellulaire (IBMC)
Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS)-Université de Strasbourg (UNISTRA)-Centre National de la Recherche Scientifique (CNRS)-Centre National de la Recherche Scientifique (CNRS)
French National Research Agency [ANR-15-CE11-0021-01 to G.Y., E.W]
European Research Council advanced grant [294312 to M.Y.]. Funding for open access charge: French National Research Agency [ANR-15-CE11-0021-01].
ANR-15-CE11-0021,RFS,Fidélité et structure du ribosome étudiée par analyse aux rayons X.(2015)
European Project: 294312,EC:FP7:ERC,ERC-2011-ADG_20110310,SBPSSHS(2012)
MATHELIN, Sandra
Fidélité et structure du ribosome étudiée par analyse aux rayons X. - - RFS2015 - ANR-15-CE11-0021 - AAPG2015 - VALID
Structural Basis of Protein Synthesis System of Human Cell - SBPSSHS - - EC:FP7:ERC2012-04-01 - 2017-03-31 - 294312 - VALID
Source :
Nucleic Acids Research, Nucleic Acids Research, 2016, 44 (13), pp.6434-41. ⟨10.1093/nar/gkw431⟩, Nucleic Acids Research, Oxford University Press, 2016, 44 (13), pp.6434-41. ⟨10.1093/nar/gkw431⟩
Publication Year :
2016
Publisher :
Oxford University Press (OUP), 2016.

Abstract

International audience; Precise conversion of genetic information into proteins is essential to cellular health. However, a margin of error exists and is at its highest on the stage of translation of mRNA by the ribosome. Here we present three crystal structures of 70S ribosome complexes with messenger RNA and transfer RNAs and show that when a G•U base pair is at the first position of the codon-anticodon helix a conventional wobble pair cannot form because of inescapable steric clash between the guanosine of the A codon and the key nucleotide of decoding center adenosine 1493 of 16S rRNA. In our structure the rigid ribosomal decoding center, which is identically shaped for cognate or near-cognate tRNAs, forces this pair to adopt a geometry close to that of a canonical G•C pair. We further strengthen our hypothesis that spatial mimicry due either to base tautomerism or ionization dominates the translation infidelity mechanism.

Details

ISSN :
13624962 and 03051048
Database :
OpenAIRE
Journal :
Nucleic Acids Research
Accession number :
edsair.doi.dedup.....9f152220eec3c83cd702b5a57b6d03f6
Full Text :
https://doi.org/10.1093/nar/gkw431