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The ribosome prohibits the G•U wobble geometry at the first position of the codon–anticodon helix
- Source :
- Nucleic Acids Research, Nucleic Acids Research, 2016, 44 (13), pp.6434-41. ⟨10.1093/nar/gkw431⟩, Nucleic Acids Research, Oxford University Press, 2016, 44 (13), pp.6434-41. ⟨10.1093/nar/gkw431⟩
- Publication Year :
- 2016
- Publisher :
- Oxford University Press (OUP), 2016.
-
Abstract
- International audience; Precise conversion of genetic information into proteins is essential to cellular health. However, a margin of error exists and is at its highest on the stage of translation of mRNA by the ribosome. Here we present three crystal structures of 70S ribosome complexes with messenger RNA and transfer RNAs and show that when a G•U base pair is at the first position of the codon-anticodon helix a conventional wobble pair cannot form because of inescapable steric clash between the guanosine of the A codon and the key nucleotide of decoding center adenosine 1493 of 16S rRNA. In our structure the rigid ribosomal decoding center, which is identically shaped for cognate or near-cognate tRNAs, forces this pair to adopt a geometry close to that of a canonical G•C pair. We further strengthen our hypothesis that spatial mimicry due either to base tautomerism or ionization dominates the translation infidelity mechanism.
- Subjects :
- Models, Molecular
0301 basic medicine
Speed wobble
Base pair
[SDV]Life Sciences [q-bio]
Geometry
Biology
Crystallography, X-Ray
[SDV.BBM.BM] Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology
Ribosome
03 medical and health sciences
RNA, Transfer
Structural Biology
RNA, Ribosomal, 16S
Anticodon
[SDV.BBM] Life Sciences [q-bio]/Biochemistry, Molecular Biology
Genetics
Protein biosynthesis
[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology
RNA, Messenger
Codon
Guanosine
030102 biochemistry & molecular biology
Thermus thermophilus
[SDV.BBM.BM]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Molecular biology
Translation (biology)
Ribosomal RNA
[SDV] Life Sciences [q-bio]
030104 developmental biology
Protein Biosynthesis
Transfer RNA
Helix
Nucleic Acid Conformation
Ribosomes
Subjects
Details
- ISSN :
- 13624962 and 03051048
- Database :
- OpenAIRE
- Journal :
- Nucleic Acids Research
- Accession number :
- edsair.doi.dedup.....9f152220eec3c83cd702b5a57b6d03f6
- Full Text :
- https://doi.org/10.1093/nar/gkw431