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Arthrobacter ulcerisalmonis sp. nov., isolated from an ulcer of a farmed Atlantic salmon (Salmo salar), and emended description of the genus Arthrobacter sensu lato

Authors :
Hans-Jürgen Busse
Ruben Avendaño-Herrera
Peter Kämpfer
Peter Schumann
Rute Irgang
Dominique Clermont
Alexis Criscuolo
Matías Poblete-Morales
Stefanie P. Glaeser
Justus-Liebig-Universität Gießen (JLU)
Veterinärmedizinische Universität Wien
Leibniz-Institut DSMZ-Deutsche Sammlung von Mikroorganismen und Zellkulturen GmbH / Leibniz Institute DSMZ-German Collection of Microorganisms and Cell Cultures (DSMZ)
Hub Bioinformatique et Biostatistique - Bioinformatics and Biostatistics HUB
Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS)
Collection de l'Institut Pasteur (CIP)
Institut Pasteur [Paris]
Universidad Andrés Bello [Santiago] (UNAB)
Interdisciplinary Center for Aquaculture Research = Centro Interdisciplinario de Investigación en Acuicultura Sustentable [Concepción, Chile] (INCAR)
R. A.-H. would like to thank for financial support from grant FONDAP 15110027.
Justus-Liebig-Universität Gießen = Justus Liebig University (JLU)
Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS)
Institut Pasteur [Paris] (IP)
Source :
International Journal of Systematic and Evolutionary Microbiology, International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, 2020, 70 (3), pp.1963-1968. ⟨10.1099/ijsem.0.004002⟩, International Journal of Systematic and Evolutionary Microbiology, 2020, 70 (3), pp.1963-1968. ⟨10.1099/ijsem.0.004002⟩
Publication Year :
2020
Publisher :
HAL CCSD, 2020.

Abstract

A Gram-stain positive, pleomorphic, oxidase-negative, non-motile isolate from the ulcer of a farmed Atlantic salmon (Salmo salar), designated strain T11bT, was subjected to a comprehensive taxonomic investigation. A comparative analysis of the 16S rRNA gene sequence showed highest similarities to the type strains of Pseudarthrobacter siccitolerans (98.1 %) and Arthrobacter methylotrophus and Pseudarthrobacter phenanthrenivorans (both 98.0 %). The highest ANI value observed between the assembled genome of T11bT and the publicly available Pseudarthrobacter and Arthrobacter type strain genomes were 81.15 and 80.99 %, respectively. The major respiratory quinone was menaquinone MK-9(H2). The polyamine pattern contained predominantly spermidine. The polar lipid profile consisted of the major lipids diphosphatidylglycerol, phosphatidylglycerol, monogalactosyl-diacylglycerol and dimannosylglyceride. Minor amouts of trimannosyldiacylglycerol and phosphatidylinositol were also detected. The peptidoglycan was of the type A3α l-Lys–l-Ser–l-Thr–l-Ala (A11.23). In the fatty acid profile, anteiso and iso branched fatty acids predominated (anteiso C15 : 0, iso C16 : 0, anteiso C17 : 0). Moderate to low DNA–DNA similarities, physiological traits as well as unique traits in the fatty acid pattern distinguished strain T11bT from the next related species. All these data point to the fact that strain T11bT represents a novel species of the genus Arthrobacter for which we propose the name Arthrobacter ulcerisalmonis sp. nov. The type strain is T11bT (=CIP 111621T=CCM 8854T=LMG 30632T=DSM 107127T).

Details

Language :
English
ISSN :
14665026 and 14665034
Database :
OpenAIRE
Journal :
International Journal of Systematic and Evolutionary Microbiology, International Journal of Systematic and Evolutionary Microbiology, Microbiology Society, 2020, 70 (3), pp.1963-1968. ⟨10.1099/ijsem.0.004002⟩, International Journal of Systematic and Evolutionary Microbiology, 2020, 70 (3), pp.1963-1968. ⟨10.1099/ijsem.0.004002⟩
Accession number :
edsair.doi.dedup.....9ea73c104f22d5d3a71c1245d5f620e4