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Complete genome sequence of Desulfohalobium retbaense type strain (HR100T)

Authors :
Jonathan A. Eisen
Loren Hauser
Esther Schüler
Miriam Land
Christine Munk
Nikos C. Kyrpides
Alex Copeland
Feng Chen
Amrita Pati
Patrick S. G. Chain
James Bristow
Philip Hugenholtz
Hans-Peter Klenk
Thomas Brettin
Yun Juan Chang
Manfred Rohde
Krishna Palaniappan
Matt Nolan
Jan Fang Cheng
Lynne Goodwin
Konstantinos Mavromatis
Tijana Glavina del Rio
Natalia Mikhailova
Sam Pitluck
John C. Detter
Susan Lucas
Markus Göker
Hajnalka Kiss
Natalia Ivanova
Hope Tice
Alla Lapidus
David Bruce
Victor Markowitz
Cliff Han
Stefan Spring
Cynthia D. Jeffries
Amy Chen
Source :
Standards in Genomic Sciences
Publication Year :
2010
Publisher :
Michigan State University, 2010.

Abstract

Desulfohalobium retbaense (Ollivier et al. 1991) is the type species of the polyphyletic genus Desulfohalobium, which comprises, at the time of writing, two species and represents the family Desulfohalobiaceae within the Deltaproteobacteria. D. retbaense is a moderately halophilic sulfate-reducing bacterium, which can utilize H2 and a limited range of organic substrates, which are incompletely oxidized to acetate and CO2, for growth. The type strain ${\rm HR}_{100}^{\rm T}$ was isolated from sediments of the hypersaline Retba Lake in Senegal. Here we describe the features of this organism, together with the complete genome sequence and annotation. This is the first completed genome sequence of a member of the family Desulfohalobiaceae. The 2,909,567 bp genome (one chromosome and a 45,263 bp plasmid) with its 2,552 protein-coding and 57 RNA genes is a part of the Genomic Encyclopedia of Bacteria and Archaea project.

Details

Language :
English
ISSN :
19443277
Volume :
2
Issue :
1
Database :
OpenAIRE
Journal :
Standards in Genomic Sciences
Accession number :
edsair.doi.dedup.....9d3c606db756820adfedd09372b356e9