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Chromosome-level reference genome of the European wasp spiderArgiope bruennichi: a resource for studies on range expansion and evolutionary adaptation
- Source :
- GigaScience, vol 10, iss 1, GigaScience
- Publication Year :
- 2021
- Publisher :
- Oxford University Press (OUP), 2021.
-
Abstract
- BackgroundArgiope bruennichi, the European wasp spider, has been investigated intensively as a focal species for studies on sexual selection, chemical communication, and the dynamics of rapid range expansion at a behavioral and genetic level. However, the lack of a reference genome has limited insights into the genetic basis for these phenomena. Therefore, we assembled a high-quality chromosome-level reference genome of the European wasp spider as a tool for more in-depth future studies.FindingsWe generated, de novo, a 1.67 Gb genome assembly of A. bruennichi using 21.8× Pacific Biosciences sequencing, polished with 19.8× Illumina paired-end sequencing data, and proximity ligation (Hi-C)-based scaffolding. This resulted in an N50 scaffold size of 124 Mb and an N50 contig size of 288 kb. We found 98.4% of the genome to be contained in 13 scaffolds, fitting the expected number of chromosomes (n = 13). Analyses showed the presence of 91.1% of complete arthropod BUSCOs, indicating a high-quality assembly.ConclusionsWe present the first chromosome-level genome assembly in the order Araneae. With this genomic resource, we open the door for more precise and informative studies on evolution and adaptation not only in A. bruennichi but also in arachnids overall, shedding light on questions such as the genomic architecture of traits, whole-genome duplication, and the genomic mechanisms behind silk and venom evolution.
- Subjects :
- 0106 biological sciences
AcademicSubjects/SCI02254
Wasps
venom
Sequence assembly
Health Informatics
Data Note
010603 evolutionary biology
01 natural sciences
Genome
Chromosomes
03 medical and health sciences
Hi-C
Genetics
Animals
silk
spider
030304 developmental biology
PacBio
0303 health sciences
Spider
biology
Contig
Human Genome
Hox duplication
Chromosome
Spiders
Genomics
biology.organism_classification
Computer Science Applications
Argiope bruennichi
Evolutionary biology
chromosome-level
genome assembly
AcademicSubjects/SCI00960
Araneae
Adaptation
Biotechnology
Reference genome
Subjects
Details
- ISSN :
- 2047217X
- Volume :
- 10
- Database :
- OpenAIRE
- Journal :
- GigaScience
- Accession number :
- edsair.doi.dedup.....9d1cca7ac093baee138a9cb9c71b7843
- Full Text :
- https://doi.org/10.1093/gigascience/giaa148