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Alzheimer's disease: early alterations in brain DNA methylation at ANK1, BIN1, RHBDF2 and other loci
- Source :
- Nature neuroscience, vol 17, iss 9, Nature neuroscience, PMC
- Publication Year :
- 2014
- Publisher :
- eScholarship, University of California, 2014.
-
Abstract
- We used a collection of 708 prospectively collected autopsied brains to assess the methylation state of the brain's DNA in relation to Alzheimer's disease (AD). We found that the level of methylation at 71 of the 415,848 interrogated CpGs was significantly associated with the burden of AD pathology, including CpGs in the ABCA7 and BIN1 regions, which harbor known AD susceptibility variants. We validated 11 of the differentially methylated regions in an independent set of 117 subjects. Furthermore, we functionally validated these CpG associations and identified the nearby genes whose RNA expression was altered in AD: ANK1, CDH23, DIP2A, RHBDF2, RPL13, SERPINF1 and SERPINF2. Our analyses suggest that these DNA methylation changes may have a role in the onset of AD given that we observed them in presymptomatic subjects and that six of the validated genes connect to a known AD susceptibility gene network.<br />National Institutes of Health (U.S.) (Grant R01 AG036042)<br />National Institutes of Health (U.S.) (Grant R01AG036836)<br />National Institutes of Health (U.S.) (Grant R01 AG17917)<br />National Institutes of Health (U.S.) (Grant R01AG15819)<br />National Institutes of Health (U.S.) (Grant R01 AG032990)<br />National Institutes of Health (U.S.) (Grant R01 AG18023)<br />National Institutes of Health (U.S.) (Grant RC2 AG036547)<br />National Institutes of Health (U.S.) (Grant P30 AG10161)<br />National Institutes of Health (U.S.) (Grant P50 AG016574)<br />National Institutes of Health (U.S.) (Grant U01 ES017155)<br />National Institutes of Health (U.S.) (Grant KL2 RR024151)<br />National Institutes of Health (U.S.) (Grant K25 AG041906-01)
- Subjects :
- Male
Aging
Genome-wide association study
Neurodegenerative
Alzheimer's Disease
80 and over
2.1 Biological and endogenous factors
Psychology
Protein Interaction Maps
Aetiology
Epigenomics
Genetics
Aged, 80 and over
General Neuroscience
Intracellular Signaling Peptides and Proteins
Brain
Adaptor Proteins
Nuclear Proteins
Methylation
Amyloidosis
Middle Aged
3. Good health
CpG site
Neurological
DNA methylation
Female
Cognitive Sciences
Alzheimer's disease
Ankyrins
and over
Biology
Article
Alzheimer Disease
Acquired Cognitive Impairment
medicine
Humans
Genetic Predisposition to Disease
Gene
Adaptor Proteins, Signal Transducing
Aged
Neurology & Neurosurgery
Tumor Suppressor Proteins
Human Genome
Signal Transducing
Neurosciences
Alzheimer's Disease including Alzheimer's Disease Related Dementias (AD/ADRD)
DNA Methylation
medicine.disease
Brain Disorders
Differentially methylated regions
Dementia
CpG Islands
Carrier Proteins
Genome-Wide Association Study
Subjects
Details
- Database :
- OpenAIRE
- Journal :
- Nature neuroscience, vol 17, iss 9, Nature neuroscience, PMC
- Accession number :
- edsair.doi.dedup.....9a974837cae6e59fe63347d554da5f01