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Review: To be or not to be an identifiable model. Is this a relevant question in animal science modelling?
- Source :
- animal, animal, Published by Elsevier (since 2021) / Cambridge University Press (until 2020), 2018, 12 (04), pp.701-712. ⟨10.1017/S1751731117002774⟩, Animal, Vol 12, Iss 4, Pp 701-712 (2018), Animal, Animal, 2018, 12 (04), pp.701-712. ⟨10.1017/S1751731117002774⟩, animal, Cambridge University Press (CUP), 2018, 12 (04), pp.701-712. ⟨10.1017/S1751731117002774⟩, Animal, Published by Elsevier (since 2021) / Cambridge University Press (until 2020), 2018, 12 (04), pp.701-712. ⟨10.1017/S1751731117002774⟩, Animal 4 (12), 701-712. (2018)
- Publication Year :
- 2018
- Publisher :
- Elsevier BV, 2018.
-
Abstract
- What is a good (useful) mathematical model in animal science? For models constructed for prediction purposes, the question of model adequacy (usefulness) has been traditionally tackled by statistical analysis applied to observed experimental data relative to model-predicted variables. However, little attention has been paid to analytic tools that exploit the mathematical properties of the model equations. For example, in the context of model calibration, before attempting a numerical estimation of the model parameters, we might want to know if we have any chance of success in estimating a unique best value of the model parameters from available measurements. This question of uniqueness is referred to as structural identifiability; a mathematical property that is defined on the sole basis of the model structure within a hypothetical ideal experiment determined by a setting of model inputs (stimuli) and observable variables (measurements). Structural identifiability analysis applied to dynamic models described by ordinary differential equations (ODEs) is a common practice in control engineering and system identification. This analysis demands mathematical technicalities that are beyond the academic background of animal science, which might explain the lack of pervasiveness of identifiability analysis in animal science modelling. To fill this gap, in this paper we address the analysis of structural identifiability from a practitioner perspective by capitalizing on the use of dedicated software tools. Our objectives are (i) to provide a comprehensive explanation of the structural identifiability notion for the community of animal science modelling, (ii) to assess the relevance of identifiability analysis in animal science modelling and (iii) to motivate the community to use identifiability analysis in the modelling practice (when the identifiability question is relevant). We focus our study on ODE models. By using illustrative examples that include published mathematical models describing lactation in cattle, we show how structural identifiability analysis can contribute to advancing mathematical modelling in animal science towards the production of useful models and, moreover, highly informative experiments via optimal experiment design. Rather than attempting to impose a systematic identifiability analysis to the modelling community during model developments, we wish to open a window towards the discovery of a powerful tool for model construction and experiment design.
- Subjects :
- 0301 basic medicine
Computer science
[MATH.MATH-DS]Mathematics [math]/Dynamical Systems [math.DS]
Context (language use)
Models, Biological
SF1-1100
dynamic modelling
parameter identification
03 medical and health sciences
modèle mathématique
Animal science
Laboratory Animal Science
Animals
Lactation
Relevance (information retrieval)
modélisation
Structure (mathematical logic)
model calibration
Models, Statistical
optimal experiment design
Mathematical model
Animal Nutrition Sciences
[SDV.BA]Life Sciences [q-bio]/Animal biology
0402 animal and dairy science
Ode
System identification
identifiability
[SDV.NEU.SC]Life Sciences [q-bio]/Neurons and Cognition [q-bio.NC]/Cognitive Sciences
Experimental data
04 agricultural and veterinary sciences
[INFO.INFO-MO]Computer Science [cs]/Modeling and Simulation
[SDV.BIBS]Life Sciences [q-bio]/Quantitative Methods [q-bio.QM]
040201 dairy & animal science
Animal culture
030104 developmental biology
Research Design
Models, Animal
Identifiability
Cattle
Female
Animal Science and Zoology
Software
Subjects
Details
- ISSN :
- 17517311 and 1751732X
- Volume :
- 12
- Database :
- OpenAIRE
- Journal :
- Animal
- Accession number :
- edsair.doi.dedup.....99bd7c9936a98dbc3a1b7a859aad2c79
- Full Text :
- https://doi.org/10.1017/s1751731117002774