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Small-RNA-mediated transgenerational silencing of histone genes impairs fertility in piRNA mutants

Authors :
Blaise Li
Martino Ugolini
Damarys Loew
Germano Cecere
Aleksei Samolygo
Céline Didier
Eric Cornes
Meetali Singh
Giorgia Barucci
Piergiuseppe Quarato
Florent Dingli
Mécanismes de l'Hérédité épigénétique / Mechanisms of epigenetic inheritance
Centre National de la Recherche Scientifique (CNRS)-Institut Pasteur [Paris]
Hub Bioinformatique et Biostatistique - Bioinformatics and Biostatistics HUB
Institut Pasteur [Paris]-Centre National de la Recherche Scientifique (CNRS)
Scuola Normale Superiore di Pisa (SNS)
Moscow Institute of Physics and Technology [Moscow] (MIPT)
Laboratoire de Spectrométrie de Masse Protéomique
Institut Curie [Paris]
This project has received funding from the Institut Pasteur, the CNRS and the European Research Council (ERC) under the EU Horizon 2020 research and innovation programme under grant agreement no. ERC-StG- 679243. G.B. is part of the Pasteur–Paris University (PPU) International PhD Program and has received funding from the EU Horizon 2020 research and innovation programme under the Marie Sklodowska-Curie grant agreement no. 665807. E.C. was supported by a Pasteur-Cantarini Fellowship program. F.D. and D.L. have received funding from Région Ile-de-France and Fondation pour la Recherche Médicale grants to support this study
We thank the members of the Cecere laboratory, D. Canzio, N. Iovino, R. Sawarkar and P. Andersen for discussions of the manuscript
the Miska, the Mello, the Kennedy, the Seydoux, the Claycomb, the Strome and the Dumont laboratories for sharing strains and/or antibodies. Some strains were provided by the CGC, funded by NIH Office of Research Infrastructure Programs (P40 OD010440).
Institut Pasteur [Paris] (IP)-Centre National de la Recherche Scientifique (CNRS)
Source :
Nature cell biology, Nature Cell Biology, Nature Cell Biology, Nature Publishing Group, 2020, 22 (2), pp.235-245. ⟨10.1038/s41556-020-0462-7⟩, Nature Cell Biology, 2020, 22 (2), pp.235-245. ⟨10.1038/s41556-020-0462-7⟩
Publication Year :
2020
Publisher :
Springer Science and Business Media LLC, 2020.

Abstract

International audience; PIWI-interacting RNAs (piRNAs) promote fertility in many animals. However, whether this is due to their conserved role in repressing repetitive elements (REs) remains unclear. Here, we show that the progressive loss of fertility in Caenorhabditis elegans lacking piRNAs is not caused by derepression of REs or other piRNA targets but, rather, is mediated by epigenetic silencing of all of the replicative histone genes. In the absence of piRNAs, downstream components of the piRNA pathway relocalize from germ granules and piRNA targets to histone mRNAs to synthesize antisense small RNAs (sRNAs) and induce transgenerational silencing. Removal of the downstream components of the piRNA pathway restores histone mRNA expression and fertility in piRNA mutants, and the inheritance of histone sRNAs in wild-type worms adversely affects their fertility for multiple generations. We conclude that sRNA-mediated silencing of histone genes impairs the fertility of piRNA mutants and may serve to maintain piRNAs across evolution.

Subjects

Subjects :
MESH: Gene Editing
MESH: CRISPR-Cas Systems
Small RNA
MESH: Argonaute Proteins / deficiency
MESH: Caenorhabditis elegans Proteins / metabolism
Inheritance Patterns
MESH: RNA, Small Interfering / genetics
MESH: Argonaute Proteins / metabolism
medicine.disease_cause
MESH: RNA, Antisense / genetics
MESH: Argonaute Proteins / genetics
Animals, Genetically Modified
Histones
0302 clinical medicine
MESH: Histones / metabolism
MESH: Animals
RNA, Small Interfering
MESH: Caenorhabditis elegans / genetics
Caenorhabditis elegans
Gene Editing
0303 health sciences
Mutation
MESH: RNA, Messenger / metabolism
[SDV.BID.EVO]Life Sciences [q-bio]/Biodiversity/Populations and Evolution [q-bio.PE]
Biological Evolution
Cell biology
Histone
MESH: Fertility / genetics
030220 oncology & carcinogenesis
Argonaute Proteins
Piwi RNAs
MESH: RNA, Messenger / genetics
MESH: Gene Silencing
Epigenetic memory
endocrine system
MESH: Mutation
MESH: Caenorhabditis elegans / metabolism
Piwi-interacting RNA
MESH: Biological Evolution
Biology
Article
MESH: Animals, Genetically Modified
03 medical and health sciences
medicine
Animals
Gene silencing
RNA, Antisense
Gene Silencing
RNA, Messenger
MESH: RNA, Antisense / metabolism
Caenorhabditis elegans Proteins
Gene
Repetitive Sequences, Nucleic Acid
030304 developmental biology
MESH: RNA, Small Interfering / metabolism
MESH: Repetitive Sequences, Nucleic Acid
MESH: Histones / genetics
urogenital system
RNA
Cell Biology
biology.organism_classification
Fertility
RNAi
biology.protein
MESH: Caenorhabditis elegans Proteins / genetics
MESH: Inheritance Patterns
CRISPR-Cas Systems

Details

ISSN :
14764679 and 14657392
Volume :
22
Database :
OpenAIRE
Journal :
Nature Cell Biology
Accession number :
edsair.doi.dedup.....983b418c96155c11b9d0637d29c2e4f8
Full Text :
https://doi.org/10.1038/s41556-020-0462-7