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Additional file 17: Figure S8. of A multi-omic analysis of human naĂŻve CD4+ T cells

Authors :
Mitchell, Christopher
Derese Getnet
Min-Sik Kim
Srikanth Manda
Kumar, Praveen
Tai-Chung Huang
Pinto, Sneha
Nirujogi, Raja
Iwasaki, Mio
Shaw, Patrick
Xinyan Wu
Zhong, Jun
Raghothama Chaerkady
Arivusudar Marimuthu
Babylakshmi Muthusamy
Sahasrabuddhe, Nandini
Raju, Rajesh
Bowman, Caitlyn
Danilova, Ludmila
Cutler, Jevon
Dhanashree Kelkar
Drake, Charles
T. Prasad
Marchionni, Luigi
Murakami, Peter
Scott, Alan
Leming Shi
Thierry-Mieg, Jean
Thierry-Mieg, Danielle
Irizarry, Rafael
Cope, Leslie
Ishihama, Yasushi
Wang, Charles
Harsha Gowda
Akhilesh Pandey
Publication Year :
2015
Publisher :
Figshare, 2015.

Abstract

Correlation between miRNA read count, transcript, and protein abundance. (A) Protein abundance versus miRNA read count. The x axis for each circle represents all miRNAs identified with a given read count while the y axis corresponds to the average iBAQ value of the genes targeted by those miRNAs with the specified read count. The dashed red line represents the iBAQ value of genes that are not targeted by any miRNAs identified in this study and serves as a background, reference level of protein expression. The black line is a linear regression of iBAQ values versus the miRNA read count. (B) Transcript abundance versus miRNA read count. The x axis for each circle represents all miRNAs identified with a given read count while the y axis corresponds to the average FPKM value of the genes targeted by those miRNAs with the specified read count. The dashed red line represents the FPKM levels of genes that are not targeted by any miRNAs identified in this study and serves as a background, reference level of transcript abundance. The black line is a linear regression of FPKM values versus miRNA read count. There is no obvious correlation between FPKM values and miRNA read counts. (PDF 150 kb)

Details

Database :
OpenAIRE
Accession number :
edsair.doi.dedup.....96213822c9dfd0f38ffa96ef8aa1bb1f
Full Text :
https://doi.org/10.6084/m9.figshare.c.3602660_d25