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Rhodococcus aerolatus sp. nov., isolated from subarctic rainwater
- Source :
- International journal of systematic and evolutionary microbiology. 65(Pt 2)
- Publication Year :
- 2014
-
Abstract
- A Gram-stain-positive, rod-shaped and non-motile strain, designated PAMC 27367T, was isolated from rainwater collected on the Bering Sea. Analysis of the 16S rRNA gene sequence of the strain showed an affiliation with the genus Rhodococcus . Phylogenetic analyses revealed that strain PAMC 27367T formed a robust clade with the type strains of Rhodococcus rhodnii , Rhodococcus aetherivorans and Rhodococcus ruber with 16S rRNA gene sequence similarities of 96.3 %, 95.8 % and 95.5 %, respectively. Cells of the strain grew optimally at 25 °C and at pH 6.5–7.0 in the presence of 0–2 % (w/v) sea salts. The major polar lipids were diphosphatidylglycerol, phosphatidylglycerol, phosphatidylethanolamine, phosphatidylinositol, phosphatidylinositol mannoside and three unknown phospholipids. The major cellular fatty acids (>10 %) were iso-C16 : 0, C17 : 1ω8c and 10-methyl C17 : 0. Cell wall analysis showed that strain PAMC 27367T contained meso-diaminopimelic acid. The genomic DNA G+C content was 77.1 mol%. Based on the phylogenetic, chemotaxonomic and phenotypic data presented here, we propose a novel species with the name Rhodococcus aerolatus sp. nov., with PAMC 27367T ( = KCTC 29240T = JCM 19485T) as the type strain.
- Subjects :
- DNA, Bacterial
Sequence analysis
Oceans and Seas
Rain
Molecular Sequence Data
Biology
Diaminopimelic Acid
Microbiology
chemistry.chemical_compound
Phylogenetics
RNA, Ribosomal, 16S
Rhodococcus
Phosphatidylinositol
Ecology, Evolution, Behavior and Systematics
Phospholipids
Phylogeny
Base Composition
Phylogenetic tree
Strain (chemistry)
Fatty Acids
General Medicine
Sequence Analysis, DNA
Ribosomal RNA
16S ribosomal RNA
Bacterial Typing Techniques
genomic DNA
chemistry
Subjects
Details
- ISSN :
- 14665034
- Volume :
- 65
- Issue :
- Pt 2
- Database :
- OpenAIRE
- Journal :
- International journal of systematic and evolutionary microbiology
- Accession number :
- edsair.doi.dedup.....94df7003c2f22aef77ffea099d96fb76