Additional file 5 of Reprogramming of the wheat transcriptome in response to infection with Claviceps purpurea, the causal agent of ergot

Additional file 5 Heatmaps of hormone-associated differentially expressed genes (DEG) across time points and tissues. DEG are defined by functional categories: Each figure shows the hormone-associated genes differentially up-regulated (log2 fold change in red) or down-regulated (in green) in wheat inoculated with Claviceps purpurea, relative to Mock-inoculated wheat, in stigma (S), transmitting (T) and base (B) tissues of the wheat ovary, at timepoints after inoculation: 24 h (24H), 48 h (48H), 72 h (72H), 5 days (5D) and 7 days (7D). Figure (a) Auxin-related genes ((Categories from top to bottom: Auxin/indole-3-acetic acid (AUX/IAA), Glycoside Hydrolase 3 (GH3), small Auxin-Up RNAs (SAURs)). Figure (b) Ethylene-related genes ((Categories from top to bottom: 1-Aminocyclopropane-1-carboxylate oxidase (ACO), 1-Aminocyclopropane-1-carboxylate synthase (ACS), Ethylene responsive transcription factors (ERF)). Figure (c) Cytokinin-related genes ((Categories from top to bottom: cytokinin riboside 5′-monophosphate phosphoribohydrolase (CK 5′), cytokinin specific glycosyltransferases (CK glyc), cytokinin oxidase/dehydrogenase (CKX)). Figure (d) Gibberellic acid-related genes ((Categories from top to bottom: DELLA, gibberellin 2-beta-oxidase (Gibber 2-beta), GA-INSENSITIVE DWARF1 (GID1)). Figure (e) Jasmonic acid-related genes ((Categories from top to bottom: TIFY transcription factors (TIFY TF), allene oxide synthase (AOS), coronatine-insensitive 1 (COI1), Novel INteractor of JAZ (NINJA), 12-oxophytodienoate reductase (OPR)). Figure (f) Salicylic acid-related genes ((Categories: NON-EXPRESSOR OF PR3 (NPR3)). Traes number refers to the gene annotation provided by the International Wheat Genome Sequencing Consortium (IWGSC) wheat genomic reference from wheat variety Chinese Spring [30].(PPTX 7966 kb)