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Transfer of the waterfall source isolate Pectobacterium carotovorum M022 to Pectobacterium fontis sp. nov., a deep-branching species within the genus Pectobacterium
- Source :
- International Journal of Systematic and Evolutionary Microbiology, International Journal of Systematic and Evolutionary Microbiology, 2019, 69 (2), pp.470--475. ⟨10.1099/ijsem.0.003180⟩
- Publication Year :
- 2019
- Publisher :
- HAL CCSD, 2019.
-
Abstract
- International audience; Pectobacterium carotovorum M022(T) has been isolated from a waterfall source in Selangor district (Malaysia). Using genomic and phenotypic tests, we re-examined the taxonomical position of this strain. Based on 14 concatenated housekeeping genes (fusA, rpoD, rpoS, acnA, purA, gyrB, recA, mdh, mtID, groEL, secY, glyA, gapA and rpIB), multi-locus sequence analysis revealed that strain M022(T) falls into a novel Glade separated from the other Pectobacterium species. The in silico DNA-DNA hybridization and average nucleotide identity values were lower than the 70 and 95% threshold values, respectively. In addition, by combining genomic and phenotypic tests, strain M022(T) may be distinguished from the other Pectobacterium isolates by its incapacity to grow on D(+)-xylose, L-rhamnose, cellobiose and lactose. Strain M022(T) (=CFBP 8629(T)=LMG 30744(T)) is proposed as the type strain of the Pectobacterium fontis sp. nov.
- Subjects :
- 0106 biological sciences
0301 basic medicine
DNA, Bacterial
Pectobacterium
Sequence analysis
[SDV]Life Sciences [q-bio]
water
Dickeya
Pectobacterium carotovorum
bacterial soft-rot
Cellobiose
brasiliense
010603 evolutionary biology
01 natural sciences
Microbiology
subsp carotovorum
03 medical and health sciences
Bacterial soft rot
chemistry.chemical_compound
taxonomy
atrosepticum
wasabiae
stem rot
Ecology, Evolution, Behavior and Systematics
Phylogeny
waterfall
Genetics
biology
Malaysia
Nucleic Acid Hybridization
General Medicine
Sequence Analysis, DNA
biology.organism_classification
pectinolytic
Housekeeping gene
Bacterial Typing Techniques
1st report
030104 developmental biology
chemistry
Genes, Bacterial
potato
Water Microbiology
rpoS
pathogen
Subjects
Details
- Language :
- English
- ISSN :
- 14665026 and 14665034
- Database :
- OpenAIRE
- Journal :
- International Journal of Systematic and Evolutionary Microbiology, International Journal of Systematic and Evolutionary Microbiology, 2019, 69 (2), pp.470--475. ⟨10.1099/ijsem.0.003180⟩
- Accession number :
- edsair.doi.dedup.....9007336b2bea87cbbc97b1d891d26bea