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Richness of human gut microbiome correlates with metabolic markers

Authors :
Le Chatelier, Emmanuelle
Nielsen, Trine
Qin, Junjie
Prifti, Edi
Hildebrand, Falk
Falony, Gwen
Almeida, Mathieu
Arumugam, Manimozhiyan
Batto, Jean-Michel
Kennedy, Sean
Leonard, Pierre
Li, Junhua
Burgdorf, Kristoffer
Grarup, Niels
Jørgensen, Torben
Brandslund, Ivan
Nielsen, Henrik Bjørn
Juncker, Agnieszka S.
Bertalan, Marcelo
Levenez, Florence
Pons, Nicolas
Rasmussen, Simon
Sunagawa, Shinichi
Tap, Julien
Tims, Sebastian
Zoetendal, Erwin G.
Brunak, Søren
Clément, Karine
Doré, Joël
Kleerebezem, Michiel
Kristiansen, Karsten
Renault, Pierre
Sicheritz-Ponten, Thomas
de Vos, Willem M.
Zucker, Jean-Daniel
Raes, Jeroen
Hansen, Torben
Guedon, Eric
Delorme, Christine
Layec, Séverine
Khaci, Ghalia
van de Guchte, Maarten
Vandemeulebrouck, Gaetana
Jamet, Alexandre
Dervyn, Rozenn
Sanchez, Nicolas
Maguin, Emmanuelle
Haimet, Florence
Winogradski, Yohanan
Cultrone, Antonella
Leclerc, Marion
Juste, Catherine
Blottière, Hervé
Pelletier, Eric
LePaslier, Denis
Artiguenave, François
Bruls, Thomas
Weissenbach, Jean
Turner, Keith
Parkhill, Julian
Antolin, Maria
Manichanh, Chaysavanh
Casellas, Francesc
Boruel, Natalia
Varela, Encarna
Torrejon, Antonio
Guarner, Francisco
Denariaz, Gérard
Derrien, Muriel
van Hylckama Vlieg, Johan E. T.
Veiga, Patrick
Oozeer, Raish
Knol, Jan
Rescigno, Maria
Brechot, Christian
M’Rini, Christine
Mérieux, Alexandre
Yamada, Takuji
Bork, Peer
Wang, Jun
Ehrlich, S. Dusko
Pedersen, Oluf
MetaGenoPolis
Institut National de la Recherche Agronomique (INRA)
Novo Nordisk Foundation Center for Basic Metabolic Research (CBMR)
Faculty of Health and Medical Sciences
University of Copenhagen = Københavns Universitet (KU)-University of Copenhagen = Københavns Universitet (KU)
Beijing Genomics Institute [Shenzhen] (BGI)
Department of Structural Biology
Flanders Institute for Biotechnology
Department of Bioscience Engineering
Vrije Universiteit Brussel (VUB)
European Molecular Biology Laboratory
School of Bioscience and Biotechnology
Southern University of Science and Technology [Shenzhen] (SUSTech)
Research Centre for Prevention and Health (RCPH)
Department of Public Health [Copenhagen]
University of Copenhagen = Københavns Universitet (KU)-University of Copenhagen = Københavns Universitet (KU)-Faculty of Health and Medical Sciences
University of Copenhagen = Københavns Universitet (KU)-University of Copenhagen = Københavns Universitet (KU)-Capital Region of Denmark
University of Copenhagen = Københavns Universitet (KU)
Faculty of Medicine, Institute of Public Health
Aalborg University [Denmark] (AAU)
Department of Clinical Biochemistry
Vejle Hospital
Institute of Regional Health Research
University of Southern Denmark (SDU)
Center for Biological Sequence Analysis & Novo Nordisk Foundation Center for Biosustainability
Technical University of Denmark [Lyngby] (DTU)
Laboratory of Microbiology
Wageningen University and Research [Wageningen] (WUR)
U872 Centre de Recherche des Cordeliers, Nutriomique, Équipe 7
Centre de Recherche des Cordeliers (CRC (UMR_S 872))
Université Paris Descartes - Paris 5 (UPD5)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Université Paris Descartes - Paris 5 (UPD5)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)
Université Pierre et Marie Curie - Paris 6 (UPMC)
Centre de Recherche en Nutrition Humaine d'Ile-de-France (CRNH Ile-de-France), Institute of Cardiometabolism and Nutrition
Assistance Publique - Hôpitaux de Paris
MICrobiologie de l'ALImentation au Service de la Santé (MICALIS)
Institut National de la Recherche Agronomique (INRA)-AgroParisTech
Department of Biology [Copenhagen]
Faculty of Science [Copenhagen]
Department of Bacteriology and Immunology [Helsinki]
Haartman Institute [Helsinki]
Faculty of Medecine [Helsinki]
University of Helsinki-University of Helsinki-Faculty of Medecine [Helsinki]
University of Helsinki-University of Helsinki
Unité de modélisation mathématique et informatique des systèmes complexes [Bondy] (UMMISCO)
Université Pierre et Marie Curie - Paris 6 (UPMC)-Université de Yaoundé I-Institut de la francophonie pour l'informatique-Université Cheikh Anta Diop [Dakar, Sénégal] (UCAD)-Université Gaston Bergé (Saint-Louis, Sénégal)-Université Cadi Ayyad [Marrakech] (UCA)
Faculty of Health Sciences
King Abdulaziz University
Center for Sequencing
Aarhus University [Aarhus]
Hagedorn Research Institute
Faculty of Health
Département Microbiologie et Chaîne Alimentaire (MICA)
European Community (HEALTH-F4-2007-201052) - Lundbeck Foundation Centre for Applied Medical Genomics in Personalized Disease Prediction, Prevention and Care (LuCamp) - ANR MicroObes, the Metagenopolis grant (ANR-11-DPBS-0001 ) - Region Ile de France (CODDIM) - Fondacoeur - Novo Nordisk Foundation
US 1367 MetaGénoPolis
Institut National de la Recherche Agronomique ( INRA ) -MetaGénoPolis ( MGP ) -Microbiologie et Chaîne Alimentaire ( MICA )
Faculty of Health and Medical Sciences, The Novo Nordisk Foundation Center for Basic Metabolic Research
University of Copenhagen ( KU )
Beijing Genomics Institute
Vrije Universiteit [Brussel] ( VUB )
South University of Science and Technology of China
Research Centre for Prevention and Health
Glostrup University Hospital
Aalborg University [Denmark] ( AAU )
UNIVERSITY OF SOUTHERN DENMARK
Technical University of Denmark [Lyngby] ( DTU )
Wageningen University and Research Centre [Wageningen] ( WUR )
Centre de Recherche des Cordeliers ( CRC (UMR_S 872) )
Université Pierre et Marie Curie - Paris 6 ( UPMC ) -Université Paris Descartes - Paris 5 ( UPD5 ) -Institut National de la Santé et de la Recherche Médicale ( INSERM ) -Centre National de la Recherche Scientifique ( CNRS ) -Université Pierre et Marie Curie - Paris 6 ( UPMC ) -Université Paris Descartes - Paris 5 ( UPD5 ) -Institut National de la Santé et de la Recherche Médicale ( INSERM ) -Centre National de la Recherche Scientifique ( CNRS )
Université Pierre et Marie Curie - Paris 6 ( UPMC )
MICrobiologie de l'ALImentation au Service de la Santé humaine ( MICALIS )
Institut National de la Recherche Agronomique ( INRA ) -AgroParisTech
Department of Biology
Department of Bacteriology and Immunology
Unité de modélisation mathématique et informatique des systèmes complexes [Bondy] ( UMMISCO )
Université Pierre et Marie Curie - Paris 6 ( UPMC ) -Institut de la francophonie pour l'informatique-Université Cheikh Anta Diop ( UCAD ) -Université Gaston Bergé (Saint-Louis, Sénégal)-Universtié Yaoundé 1 [Cameroun]-University Cadi Ayyad ( UCA )
Department of Biology / Novo Nordisk Foundation Center for Basic Metabolic Research
Faculty of Health and Medical Sciences, The Novo Nordisk Foundation Center for Basic Metabolic Research / Institute of Biomedical Science
Département Microbiologie et Chaîne Alimentaire ( MICA )
Institut National de la Recherche Agronomique ( INRA )
Université Pierre et Marie Curie - Paris 6 (UPMC)-Université Paris Descartes - Paris 5 (UPD5)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Université Paris Descartes - Paris 5 (UPD5)-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)
Université Cadi Ayyad [Marrakech] (UCA)-Université de Yaoundé I-Université Gaston Bergé (Saint-Louis, Sénégal)-Université Cheikh Anta Diop [Dakar, Sénégal] (UCAD)-Institut de la francophonie pour l'informatique-Université Pierre et Marie Curie - Paris 6 (UPMC)
Institut National de la Recherche Agronomique (INRA)-Département Microbiologie et Chaîne Alimentaire (MICA)
Institut National de la Recherche Agronomique (INRA)-MetaGénoPolis (MGP)
Vrije Universiteit [Brussels] (VUB)
Wageningen University and Research Centre [Wageningen] (WUR)
Université Cadi Ayyad [Marrakech] (UCA)-Universtié Yaoundé 1 [Cameroun]-Université Gaston Bergé (Saint-Louis, Sénégal)-Université Cheikh Anta Diop [Dakar, Sénégal] (UCAD)-Institut de la francophonie pour l'informatique-Université Pierre et Marie Curie - Paris 6 (UPMC)
University of Copenhagen = Københavns Universitet (UCPH)-University of Copenhagen = Københavns Universitet (UCPH)
Southern University of Science and Technology (SUSTech)
University of Copenhagen = Københavns Universitet (UCPH)-University of Copenhagen = Københavns Universitet (UCPH)-Faculty of Health and Medical Sciences
University of Copenhagen = Københavns Universitet (UCPH)-University of Copenhagen = Københavns Universitet (UCPH)-Capital Region of Denmark
University of Copenhagen = Københavns Universitet (UCPH)
Vejle Hospital [Danemark]
Danmarks Tekniske Universitet = Technical University of Denmark (DTU)
Helsingin yliopisto = Helsingfors universitet = University of Helsinki-Helsingin yliopisto = Helsingfors universitet = University of Helsinki-Faculty of Medecine [Helsinki]
Helsingin yliopisto = Helsingfors universitet = University of Helsinki-Helsingin yliopisto = Helsingfors universitet = University of Helsinki
Institut de Recherche pour le Développement (IRD)-Université Pierre et Marie Curie - Paris 6 (UPMC)-Université de Yaoundé I-Institut de la francophonie pour l'informatique-Université Cheikh Anta Diop [Dakar, Sénégal] (UCAD)-Université Gaston Bergé (Saint-Louis, Sénégal)-Université Cadi Ayyad [Marrakech] (UCA)
Source :
Le Chatelier, E, Nielsen, T, Qin, J, Prifti, E, Hildebrand, F, Falony, G, Almeida, M, Arumugam, M, Batto, J-M, Kennedy, S, Leonard, P, Li, J, Burgdorf, K, Grarup, N, Jørgensen, T, Brandslund, I, Nielsen, H B, Juncker, A S, Bertalan, M, Levenez, F, Pons, N, Rasmussen, S, Sunagawa, S, Tap, J, Tims, S, Zoetendal, E G, Brunak, S, Clément, K, Doré, J, Kleerebezem, M, Kristiansen, K, Renault, P, Sicheritz-Ponten, T, de Vos, W M, Zucker, J-D, Raes, J, Hansen, T, Guedon, E, Delorme, C, Layec, S, Khaci, G, van de Guchte, M, Vandemeulebrouck, G, Jamet, A, Dervyn, R, Sanchez, N, Maguin, E, Haimet, F, Winogradski, Y, Cultrone, A, Leclerc, M, Juste, C, Blottière, H, Pelletier, E, LePaslier, D, Artiguenave, F, Bruls, T, Weissenbach, J, Turner, K, Parkhill, J, Antolin, M, Manichanh, C, Casellas, F, Boruel, N, Varela, E, Torrejon, A, Guarner, F, Denariaz, G, Derrien, M, van Hylckama Vlieg, J E T, Veiga, P, Oozeer, R, Knol, J, Rescigno, M, Brechot, C, M’Rini, C, Mérieux, A, Yamada, T, Bork, P, Wang, J, Ehrlich, S D & Pedersen, O 2013, ' Richness of human gut microbiome correlates with metabolic markers ', Nature, vol. 500, no. 7464, pp. 541-546 . https://doi.org/10.1038/nature12506, Nature; Vol 500, Nature 500 (2013) 7464, Nature, Nature, Nature Publishing Group, 2013, 500 (7464), pp.541-546. ⟨10.1038/nature12506⟩, Nature, Nature Publishing Group, 2013, 500 (7464), pp.541-546. 〈10.1038/nature12506〉, Le Chatelier, E, Nielsen, T, Qin, J, Prifti, E, Hildebrand, F, Falony, G, Almeida, M, Arumugam, M, Batto, J-M, Kennedy, S, Leonard, P, Li, J, Burgdorf, K S, Grarup, N, Jørgensen, T, Brandslund, I, Nielsen, H B, Juncker, A, Bertalan, M, Levenez, F, Pons, N, Rasmussen, S, Sunagawa, S, Tap, J, Tims, S, Zoetendal, E G, Brunak, S, Clément, K, Doré, J, Kleerebezem, M, Kristiansen, K, Renault, P, Sicheritz-Ponten, T, de Vos, W M, Zucker, J-D, Raes, J, Hansen, T, Bork, P, Wang, J, Ehrlich, S D, Pedersen, O B & MetaHIT consortium 2013, ' Richness of human gut microbiome correlates with metabolic markers ', Nature Communications, vol. 500, no. 7464, pp. 541-546 . https://doi.org/10.1038/nature12506, Nature, 500(7464), 541-546, Nature, 2013, 500 (7464), pp.541-546. ⟨10.1038/nature12506⟩
Publication Year :
2013

Abstract

We are facing a global metabolic health crisis provoked by an obesity epidemic. Here we report the human gut microbial composition in a population sample of 123 non-obese and 169 obese Danish individuals. We find two groups of individuals that differ by the number of gut microbial genes and thus gut bacterial richness. They contain known and previously unknown bacterial species at different proportions; individuals with a low bacterial richness (23% of the population) are characterized by more marked overall adiposity, insulin resistance and dyslipidaemia and a more pronounced inflammatory phenotype when compared with high bacterial richness individuals. The obese individuals among the lower bacterial richness group also gain more weight over time. Only a few bacterial species are sufficient to distinguish between individuals with high and low bacterial richness, and even between lean and obese participants. Our classifications based on variation in the gut microbiome identify subsets of individuals in the general white adult population who may be at increased risk of progressing to adiposity-associated co-morbidities.

Details

Language :
English
ISSN :
00280836, 14764679, and 14764687
Database :
OpenAIRE
Journal :
Le Chatelier, E, Nielsen, T, Qin, J, Prifti, E, Hildebrand, F, Falony, G, Almeida, M, Arumugam, M, Batto, J-M, Kennedy, S, Leonard, P, Li, J, Burgdorf, K, Grarup, N, Jørgensen, T, Brandslund, I, Nielsen, H B, Juncker, A S, Bertalan, M, Levenez, F, Pons, N, Rasmussen, S, Sunagawa, S, Tap, J, Tims, S, Zoetendal, E G, Brunak, S, Clément, K, Doré, J, Kleerebezem, M, Kristiansen, K, Renault, P, Sicheritz-Ponten, T, de Vos, W M, Zucker, J-D, Raes, J, Hansen, T, Guedon, E, Delorme, C, Layec, S, Khaci, G, van de Guchte, M, Vandemeulebrouck, G, Jamet, A, Dervyn, R, Sanchez, N, Maguin, E, Haimet, F, Winogradski, Y, Cultrone, A, Leclerc, M, Juste, C, Blottière, H, Pelletier, E, LePaslier, D, Artiguenave, F, Bruls, T, Weissenbach, J, Turner, K, Parkhill, J, Antolin, M, Manichanh, C, Casellas, F, Boruel, N, Varela, E, Torrejon, A, Guarner, F, Denariaz, G, Derrien, M, van Hylckama Vlieg, J E T, Veiga, P, Oozeer, R, Knol, J, Rescigno, M, Brechot, C, M’Rini, C, Mérieux, A, Yamada, T, Bork, P, Wang, J, Ehrlich, S D & Pedersen, O 2013, ' Richness of human gut microbiome correlates with metabolic markers ', Nature, vol. 500, no. 7464, pp. 541-546 . https://doi.org/10.1038/nature12506, Nature; Vol 500, Nature 500 (2013) 7464, Nature, Nature, Nature Publishing Group, 2013, 500 (7464), pp.541-546. ⟨10.1038/nature12506⟩, Nature, Nature Publishing Group, 2013, 500 (7464), pp.541-546. 〈10.1038/nature12506〉, Le Chatelier, E, Nielsen, T, Qin, J, Prifti, E, Hildebrand, F, Falony, G, Almeida, M, Arumugam, M, Batto, J-M, Kennedy, S, Leonard, P, Li, J, Burgdorf, K S, Grarup, N, Jørgensen, T, Brandslund, I, Nielsen, H B, Juncker, A, Bertalan, M, Levenez, F, Pons, N, Rasmussen, S, Sunagawa, S, Tap, J, Tims, S, Zoetendal, E G, Brunak, S, Clément, K, Doré, J, Kleerebezem, M, Kristiansen, K, Renault, P, Sicheritz-Ponten, T, de Vos, W M, Zucker, J-D, Raes, J, Hansen, T, Bork, P, Wang, J, Ehrlich, S D, Pedersen, O B & MetaHIT consortium 2013, ' Richness of human gut microbiome correlates with metabolic markers ', Nature Communications, vol. 500, no. 7464, pp. 541-546 . https://doi.org/10.1038/nature12506, Nature, 500(7464), 541-546, Nature, 2013, 500 (7464), pp.541-546. ⟨10.1038/nature12506⟩
Accession number :
edsair.doi.dedup.....8f6fb96ab4568e9cdd3b9d1d17959498
Full Text :
https://doi.org/10.1038/nature12506