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De novo transcriptome assembly of Setatria italica variety Taejin
- Source :
- Genomics Data, Vol 8, Iss C, Pp 121-122 (2016), Genomics Data
- Publication Year :
- 2016
- Publisher :
- Elsevier, 2016.
-
Abstract
- Foxtail millet (Setaria italica) belonging to the family Poaceae is an important millet that is widely cultivated in East Asia. Of the cultivated millets, the foxtail millet has the longest history and is one of the main food crops in South India and China. Moreover, foxtail millet is a model plant system for biofuel generation utilizing the C4 photosynthetic pathway. In this study, we carried out de novo transcriptome assembly for the foxtail millet variety Taejin collected from Korea using next-generation sequencing. We obtained a total of 8.676GB raw data by paired-end sequencing. The raw data in this study can be available in NCBI SRA database with accession number of SRR3406552. The Trinity program was used to de novo assemble 145,332 transcripts. Using the TransDecoder program, we predicted 82,925 putative proteins. BLASTP was performed against the Swiss-Prot protein sequence database to annotate the functions of identified proteins, resulting in 20,555 potentially novel proteins. Taken together, this study provides transcriptome data for the foxtail millet variety Taejin by RNA-Seq.
- Subjects :
- 0106 biological sciences
0301 basic medicine
Setaria
lcsh:QH426-470
De novo transcriptome assembly
Foxtail millet
RNA-Seq
01 natural sciences
Biochemistry
Transcriptome
03 medical and health sciences
Data in Brief
Botany
Genetics
Variety
Plant system
Sequence database
biology
Accession number (library science)
biology.organism_classification
Setalica italica
lcsh:Genetics
030104 developmental biology
Foxtail
Molecular Medicine
010606 plant biology & botany
Biotechnology
Subjects
Details
- Language :
- English
- ISSN :
- 22135960
- Volume :
- 8
- Database :
- OpenAIRE
- Journal :
- Genomics Data
- Accession number :
- edsair.doi.dedup.....8eb1ad15b9379eb258535654feb962b1