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De novo assembly of transcriptome dataset from leaves of Dryobalanops aromatica (Syn. Dryobalanops sumatrensis) seedlings grown in two contrasting potting media
- Source :
- BMC Research Notes, BMC Research Notes, Vol 13, Iss 1, Pp 1-4 (2020)
- Publication Year :
- 2020
- Publisher :
- BioMed Central, 2020.
-
Abstract
- Objectives Efforts to restore tropical peat swamp forests in Indonesia face huge challenges of potential failures due to socio-economic factors and ecological dynamics attributed to lack of knowledge on the adaptive mechanisms of potential tree species such as Kapur (Dryobalanops aromatica C.F.Gaertn Syn. Dryobalanops sumatrensis J.F. Gmelin A.J.G.H Kostermans). This species is a multi-purpose tree that, commonly grows in mineral soils, but also in peat swamp as previously reported, which raised a fundamental question regarding the molecular mechanism of this adaptation. Therefore, a dataset was created aiming to detect candidates of adaptive genes in D. aromatica seedlings, cultivated in two contrasting potting media, namely mineral soil and peat media, based on RNA Sequencing Transcriptome Analysis. Data description The RNA transcriptome data of D. aromatica’s seedlings derived from young leaves of three one-year-old seedlings, raised in each dry mineral soil media and peat media, were generated by using Illumina HiSeq 4000 platform in NovogenAIT, Singapore. The acquired data, as the first transcriptome dataset for D. aromatica, is of a great importance in understanding molecular mechanism and responses of the involved genes of D. aromatica to the contrasting, growing potting media conditions that could also be useful to generate molecular markers.
- Subjects :
- 0301 basic medicine
Peat
lcsh:Medicine
Sequence assembly
Contrast Media
Data Note
Swamp
General Biochemistry, Genetics and Molecular Biology
Transcriptome
03 medical and health sciences
0302 clinical medicine
Tropical peat
Botany
030212 general & internal medicine
lcsh:Science (General)
lcsh:QH301-705.5
geography
Singapore
geography.geographical_feature_category
biology
Dryobalanops aromatica
lcsh:R
Adaptive genetic variation
General Medicine
Peat swamp
biology.organism_classification
Dryonalanops sumatrensis
Dipterocarpaceae
Potting
Plant Leaves
030104 developmental biology
lcsh:Biology (General)
Indonesia
Seedlings
Dryobalanops
lcsh:Q1-390
Subjects
Details
- Language :
- English
- ISSN :
- 17560500
- Volume :
- 13
- Database :
- OpenAIRE
- Journal :
- BMC Research Notes
- Accession number :
- edsair.doi.dedup.....8c7af0dab81af41d36b2608494194e37