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Computational identification of significant immunogenic epitopes of the putative outer membrane proteins from Mycobacterium tuberculosis
- Source :
- Journal of Genetic Engineering and Biotechnology, Vol 19, Iss 1, Pp 1-10 (2021), Journal of Genetic Engineering & Biotechnology
- Publication Year :
- 2021
- Publisher :
- SpringerOpen, 2021.
-
Abstract
- Novel vaccines are required to effectively combat the epidemic spread of tuberculosis. Using in silico approaches, this study focuses on prediction of potential B cell and T cell binding immunogenic epitopes for 30 putative outer membrane proteins of Mtb. Among these, certain immunodominant epitopes of Rv0172, Rv0295c, Rv1006, Rv2264c, and Rv2525c were found, which are capable of binding B-cell and a maximum number of MHC alleles. The selected immunodominant epitopes were screened for their allergenic and antigenic properties, their percentage identity against the human proteome and their structural properties. Further, the binding efficacy of the immunodominant epitopes of Rv0295c and Rv1006 with HLA-DRB1*04:01 was analyzed using molecular docking and molecular dynamics studies. Hence, the in silico-derived immunogenic peptides (epitopes) could potentially be used for the design of subunit vaccines against tuberculosis. Supplementary Information The online version contains supplementary material available at 10.1186/s43141-021-00148-9.
- Subjects :
- 0301 basic medicine
lcsh:QH426-470
In silico
T cell
lcsh:Biotechnology
030231 tropical medicine
Short Communications
Computational biology
Outer membrane proteins
Major histocompatibility complex
Epitope
Mycobacterium tuberculosis
03 medical and health sciences
Epitopes
0302 clinical medicine
Antigen
lcsh:TP248.13-248.65
Genetics
Human proteome project
medicine
biology
Immunoinformatics
biology.organism_classification
lcsh:Genetics
030104 developmental biology
medicine.anatomical_structure
biology.protein
Bacterial outer membrane
Biotechnology
Subjects
Details
- Language :
- English
- ISSN :
- 20905920
- Volume :
- 19
- Issue :
- 1
- Database :
- OpenAIRE
- Journal :
- Journal of Genetic Engineering and Biotechnology
- Accession number :
- edsair.doi.dedup.....8a5a65fa07053133ce23a3f356ed8aa4