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Evolution of catalytic centers of antibodies by virtual screening of broad repertoire of mutants using supercomputer

Authors :
Alexey A. Belogurov
Spyros D. Chatziefthimiou
E. N. Hurs
R. M. Khomutov
Alexander Zlobin
Ivan V. Smirnov
Alexander G. Gabibov
G.M. Blackburn
V. D. Knorre
Matthias Wilmanns
Natalia A. Ponomarenko
A. V. Stepanova
A. O. Zalevskiy
Andrey V. Golovin
Source :
Doklady Biochemistry and Biophysics. 475:245-249
Publication Year :
2017
Publisher :
Pleiades Publishing Ltd, 2017.

Abstract

It is proposed to perform quantum mechanical/molecular dynamics calculations of chemical reactions that are planned to be catalyzed by antibodies and then conduct a virtual screening of the library of potential antibody mutants to select an optimal biocatalyst. We tested the effectiveness of this approach by the example of hydrolysis of organophosphorus toxicant paraoxon using kinetic approaches and X-ray analysis of the antibody biocatalyst designed de novo.

Details

ISSN :
16083091 and 16076729
Volume :
475
Database :
OpenAIRE
Journal :
Doklady Biochemistry and Biophysics
Accession number :
edsair.doi.dedup.....8a0007fc8ad295f9ca388e7469951355