Additional file 4: of Host-induced aneuploidy and phenotypic diversification in the Sudden Oak Death pathogen Phytophthora ramorum

The chromosomal breakpoint in scaffold 12. From the right most heterozygous SNP and the left most SNP with LOH, the breakpoints for Pr-140.9 (monosomy) and Pr-16 (cnLOH) were inferred to be within the 1.3kb red rectangle region (top panel, Integrative Genomic Viewer ver. 2.3.34). BICseq CCNV analysis for Pr-140.9 inferred the breakpoint in the close proximity to the red rectangle (middle panel). Homologous chromosomes are depicted in orange and cyan (lower panel). (PDF 57 kb)