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A draft genome of grass pea (Lathyrus sativus), a resilient diploid legume
- Publication Year :
- 2020
- Publisher :
- Cold Spring Harbor Laboratory, 2020.
-
Abstract
- We have sequenced the genome of grass pea (Lathyrus sativus), a resilient diploid (2n=14) legume closely related to pea (Pisum sativum). We determined the genome size of the sequenced European accession (LS007) as 6.3 Gbp. We generated two assemblies of this genome, i) EIv1 using Illumina PCR-free paired-end sequencing and assembly followed by long-mate-pair scaffolding and ii) Rbp using Oxford Nanopore Technologies long-read sequencing and assembly followed by polishing with Illumina paired-end data. EIv1 has a total length of 8.12 Gbp (including 1.9 billion Ns) and scaffold N50 59,7 kbp. Annotation has identified 33,819 high confidence genes in the assembly. Rbp has a total length of 6.2 Gbp (with no Ns) and a contig N50 of 155.7 kbp. Gene space assessment using the eukaryote BUSCO database showed completeness scores of 82.8 % and 89.8%, respectively.
- Subjects :
- 0106 biological sciences
Genetics
0303 health sciences
Contig
biology
food and beverages
biology.organism_classification
01 natural sciences
Genome
03 medical and health sciences
Sativum
Lathyrus
Nanopore sequencing
Ploidy
Genome size
Gene
030304 developmental biology
010606 plant biology & botany
Subjects
Details
- Database :
- OpenAIRE
- Accession number :
- edsair.doi.dedup.....813f12d264bf2f6d5b14d35dc087a360