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Complete chloroplast genome sequence of Liquidambar formosana, an ancient subtropical landscape plant to China
- Source :
- Mitochondrial DNA. Part B, Resources, article-version (VoR) Version of Record
- Publication Year :
- 2020
- Publisher :
- Informa UK Limited, 2020.
-
Abstract
- Liquidambar formosana (Hamamelidaceae) is a tertiary relic species widely distributed in subtropical areas, and is a common endemic broad-leaved tree species in south China. Here, we report and describe for the first time the complete chloroplast genome of L. formosana based on Illumina double-ended sequencing data. The complete plastid genome was 160,425 bp, which contained inverted repeats (IR) of 26,266 bp separated by a large single-copy (LSC) and a small single-copy (SSC) of 88,971 bp and 18,922 bp, respectively. The cpDNA contains 132 genes, comprising 86 protein-coding genes, 37 tRNA genes, and 8 rRNA genes. The overall GC content of the plastome is 37.9%. The phylogenetic analysis of 18 selected chloroplast genomes demonstrated that L. formosana was close to the species Sinowilsonia henryi.
- Subjects :
- 0106 biological sciences
0301 basic medicine
Whole genome sequencing
South china
Liquidambar formosana
biology
phylogenetic analysis
Liquidambar
Subtropics
biology.organism_classification
010603 evolutionary biology
01 natural sciences
Chloroplast
03 medical and health sciences
Hamamelidaceae
030104 developmental biology
hloroplastgenome
Botany
Genetics
China
Molecular Biology
Mitogenome Announcement
Research Article
Subjects
Details
- ISSN :
- 23802359
- Volume :
- 5
- Database :
- OpenAIRE
- Journal :
- Mitochondrial DNA Part B
- Accession number :
- edsair.doi.dedup.....802a7be39c4931bdc0536e07241527e3
- Full Text :
- https://doi.org/10.1080/23802359.2020.1775526