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DNA methylation analysis is used to identify novel genetic loci associated with circulating fibrinogen levels in blood

Authors :
Julie Hahn
Jan Bressler
Arce Domingo-Relloso
Ming-Huei Chen
Daniel L. McCartney
Alexander Teumer
Jenny van Dongen
Marcus E. Kleber
Dylan Aïssi
Brenton R. Swenson
Jie Yao
Wei Zhao
Jian Huang
Yujing Xia
Michael R. Brown
Ricardo Costeira
Eco J.C. de Geus
Graciela E. Delgado
Dre'Von A. Dobson
Paul Elliott
Hans J. Grabe
Xiuqing Guo
Sarah E. Harris
Jennifer E. Huffman
Sharon L.R. Kardia
Yongmei Liu
Stefan Lorkowski
Riccardo E. Marioni
Matthias Nauck
Scott M. Ratliff
Maria Sabater-Lleal
Tim D. Spector
Pierre Suchon
Kent D. Taylor
Florian Thibord
David-Alexandre Trégouët
Kerri L. Wiggins
Gonneke Willemsen
Jordana T. Bell
Dorret I. Boomsma
Shelley A. Cole
Simon R. Cox
Abbas Dehghan
Andreas Greinacher
Karin Haack
Winfried März
Pierre-Emmanuel Morange
Jerome I. Rotter
Nona Sotoodehnia
Maria Tellez-Plaza
Ana Navas-Acien
Jennifer A. Smith
Andrew D. Johnson
Myriam Fornage
Nicholas L. Smith
Alisa S. Wolberg
Alanna C. Morrison
Paul S. de Vries
Biological Psychology
Amsterdam Reproduction & Development
APH - Mental Health
APH - Personalized Medicine
AMS - Ageing & Vitality
AMS - Sports
APH - Health Behaviors & Chronic Diseases
APH - Methodology
Source :
Hahn, J, Bressler, J, Domingo-Relloso, A, Chen, M H, McCartney, D L, Teumer, A, van Dongen, J, Kleber, M E, Aïssi, D, Swenson, B R, Yao, J, Zhao, W, Huang, J, Xia, Y, Brown, M R, Costeira, R, de Geus, E J C, Delgado, G E, Dobson, DV A, Elliott, P, Grabe, H J, Guo, X, Harris, S E, Huffman, J E, Kardia, S L R, Liu, Y, Lorkowski, S, Marioni, R E, Nauck, M, Ratliff, S M, Sabater-Lleal, M, Spector, T D, Suchon, P, Taylor, K D, Thibord, F, Trégouët, D A, Wiggins, K L, Willemsen, G, Bell, J T, Boomsma, D I, Cole, S A, Cox, S R, Dehghan, A, Greinacher, A, Haack, K, März, W, Morange, P E, Rotter, J I, Sotoodehnia, N, Tellez-Plaza, M, Navas-Acien, A, Smith, J A, Johnson, A D, Fornage, M, Smith, N L, Wolberg, A S, Morrison, A C & de Vries, P S 2023, ' DNA methylation analysis is used to identify novel genetic loci associated with circulating fibrinogen levels in blood ', Journal of Thrombosis and Haemostasis, vol. 21, no. 5, pp. 1135-1147 . https://doi.org/10.1016/j.jtha.2023.01.015, Journal of Thrombosis and Haemostasis, 21(5), 1135-1147. Wiley-Blackwell, Journal of thrombosis and haemostasis 21(5), 1135-1147 (2023). doi:10.1016/j.jtha.2023.01.015
Publication Year :
2023
Publisher :
Elsevier BV, 2023.

Abstract

Background: Fibrinogen plays an essential role in blood coagulation and inflammation. Circulating fibrinogen levels may be determined based on interindividual differences in DNA methylation at cytosine-phosphate-guanine (CpG) sites and vice versa. Objectives: To perform an EWAS to examine an association between blood DNA methylation levels and circulating fibrinogen levels to better understand its biological and pathophysiological actions. Methods: We performed an epigenome-wide association study of circulating fibrinogen levels in 18 037 White, Black, American Indian, and Hispanic participants, representing 14 studies from the Cohorts for Heart and Aging Research in Genomic Epidemiology consortium. Circulating leukocyte DNA methylation was measured using the Illumina 450K array in 12 904 participants and using the EPIC array in 5133 participants. In each study, an epigenome-wide association study of fibrinogen was performed using linear mixed models adjusted for potential confounders. Study-specific results were combined using array-specific meta-analysis, followed by cross-replication of epigenome-wide significant associations. We compared models with and without CRP adjustment to examine the role of inflammation. Results: We identified 208 and 87 significant CpG sites associated with fibrinogen levels from the 450K (p < 1.03 × 10−7) and EPIC arrays (p < 5.78 × 10−8), respectively. There were 78 associations from the 450K array that replicated in the EPIC array and 26 vice versa. After accounting for overlapping sites, there were 83 replicated CpG sites located in 61 loci, of which only 4 have been previously reported for fibrinogen. The examples of genes located near these CpG sites were SOCS3 and AIM2, which are involved in inflammatory pathways. The associations of all 83 replicated CpG sites were attenuated after CRP adjustment, although many remained significant. Conclusion: We identified 83 CpG sites associated with circulating fibrinogen levels. These associations are partially driven by inflammatory pathways shared by both fibrinogen and CRP.

Details

ISSN :
15387836
Volume :
21
Database :
OpenAIRE
Journal :
Journal of Thrombosis and Haemostasis
Accession number :
edsair.doi.dedup.....7fd56af1d82d771b40ef1b00c003b619