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Time-optimal control of piecewise affine bistable gene-regulatory networks: preliminary results

Authors :
Agustín Gabriel Yabo
Nicolas Augier
Biological control of artificial ecosystems (BIOCORE)
Inria Sophia Antipolis - Méditerranée (CRISAM)
Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Laboratoire d'océanographie de Villefranche (LOV)
Institut national des sciences de l'Univers (INSU - CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut de la Mer de Villefranche (IMEV)
Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut national des sciences de l'Univers (INSU - CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut de la Mer de Villefranche (IMEV)
Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
Université Côte d'Azur (UCA)
Institut National de Recherche en Informatique et en Automatique (Inria)
This work was partially supported by ANR project Maximic (ANR-17-CE40-0024-01), Inria IPL Cosy and Labex SIGNALIFE (ANR-11-LABX-0028-01). We also acknowledge the support of the FMJH Program PGMO and the support to this program from EDF-THALES-ORANGE.
ANR-11-LABX-0028,SIGNALIFE,Réseau d'Innovation sur les Voies de Signalisation en Sciences de la Vie(2012)
ANR-17-CE40-0024,Maximic,Contrôle optimal de cellules microbiennes - stratégies naturelles et synthétiques(2017)
ANR-11-LABX-0028,SIGNALIFE,Réseau d'Innovation sur les Voies de Signalisation en Sciences de la Vie(2011)
Laboratoire d'océanographie de Villefranche (LOV)
Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Sorbonne Université (SU)-Centre National de la Recherche Scientifique (CNRS)-Inria Sophia Antipolis - Méditerranée (CRISAM)
Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche pour l’Agriculture, l’Alimentation et l’Environnement (INRAE)
Mathematics for Control, Transport and Applications (McTAO)
Institut National de Recherche en Informatique et en Automatique (Inria)-Institut National de Recherche en Informatique et en Automatique (Inria)
IFAC
Source :
ADHS, ADHS 2021-7th IFAC Conference on Analysis and Design of Hybrid Systems, ADHS 2021-7th IFAC Conference on Analysis and Design of Hybrid Systems, IFAC, Jul 2021, Brussels, Belgium. ⟨10.1016/j.ifacol.2021.08.499⟩
Publication Year :
2021
Publisher :
HAL CCSD, 2021.

Abstract

International audience; In this preliminary work we give a geometric characterization of the time-optimal trajectories for a piecewise affine bistable switch. Such hybrid models play a major role in systems biology, as they can expressively account for the behaviors of simple gene-regulatory networks. A key example of these biological circuits is the genetic toggle switch, for which the optimality of a state switch has not been studied to the present day. The main tool of this work is an adaptation of the Hybrid Pontryagin's Maximum Principle to our setting, which allows to prove that the optimal control strategy is indeed a simple bang-bang feedback control law. In opposition to previous works, we show that a time-optimal transition between states should pass by an undifferentiated state, well known in cell biology for playing a major role in fate differentiation of cells. We conclude by showing numerical simulations of optimal trajectories illustrating the structure of the bang-bang optimal control for different scenarios.

Details

Language :
English
Database :
OpenAIRE
Journal :
ADHS, ADHS 2021-7th IFAC Conference on Analysis and Design of Hybrid Systems, ADHS 2021-7th IFAC Conference on Analysis and Design of Hybrid Systems, IFAC, Jul 2021, Brussels, Belgium. ⟨10.1016/j.ifacol.2021.08.499⟩
Accession number :
edsair.doi.dedup.....7fb36f0635ad2a363e2fcc012354eeac
Full Text :
https://doi.org/10.1016/j.ifacol.2021.08.499⟩