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Jalview Version 2—a multiple sequence alignment editor and analysis workbench
- Source :
- Bioinformatics
- Publication Year :
- 2009
- Publisher :
- Oxford University Press, 2009.
-
Abstract
- Summary: Jalview Version 2 is a system for interactive WYSIWYG editing, analysis and annotation of multiple sequence alignments. Core features include keyboard and mouse-based editing, multiple views and alignment overviews, and linked structure display with Jmol. Jalview 2 is available in two forms: a lightweight Java applet for use in web applications, and a powerful desktop application that employs web services for sequence alignment, secondary structure prediction and the retrieval of alignments, sequences, annotation and structures from public databases and any DAS 1.53 compliant sequence or annotation server. Availability: The Jalview 2 Desktop application and JalviewLite applet are made freely available under the GPL, and can be downloaded from www.jalview.org Contact: g.j.barton@dundee.ac.uk
- Subjects :
- Statistics and Probability
Sequence analysis
Computer science
Sequence alignment
computer.software_genre
Biochemistry
World Wide Web
Software
Sequence Analysis, Protein
Web application
Databases, Protein
Molecular Biology
Java applet
Protein secondary structure
Multiple sequence alignment
Programming language
business.industry
WYSIWYG
Computational Biology
Proteins
Computer Science Applications
Computational Mathematics
Applications Note
Computational Theory and Mathematics
Structural biology
Workbench
Web service
business
computer
Sequence Analysis
Sequence Alignment
Subjects
Details
- Language :
- English
- ISSN :
- 14602059 and 13674803
- Volume :
- 25
- Issue :
- 9
- Database :
- OpenAIRE
- Journal :
- Bioinformatics
- Accession number :
- edsair.doi.dedup.....7d4255266737ce1e7333b9f83d1746ee