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Making sense of ultrahigh-resolution movement data: A new algorithm for inferring sites of interest
- Source :
- BMC Ecology and Evolution, BMC Ecology and Evolution, BMC, 2019, 9 (1), pp.265-274. ⟨10.1002/ece3.4721⟩, Ecology and Evolution, Ecology and Evolution, Wiley Open Access, 2019, 9 (1), pp.265-274. ⟨10.1002/ece3.4721⟩, Ecology and Evolution, 2019, 9 (1), pp.265-274. ⟨10.1002/ece3.4721⟩
- Publication Year :
- 2018
- Publisher :
- Wiley, 2018.
-
Abstract
- International audience; Decomposing the life track of an animal into behavioral segments is a fundamental challenge for movement ecology. The proliferation of high‐resolution data, often collected many times per second, offers much opportunity for understanding animal movement. However, the sheer size of modern data sets means there is an increasing need for rapid, novel computational techniques to make sense of these data. Most existing methods were designed with smaller data sets in mind and can thus be prohibitively slow. Here, we introduce a method for segmenting high‐resolution movement trajectories into sites of interest and transitions between these sites. This builds on a previous algorithm of Benhamou and Riotte‐Lambert (2012). Adapting it for use with high‐resolution data. The data’s resolution removed the need to interpolate between successive locations, allowing us to increase the algorithm’s speed by approximately two orders of magnitude with essentially no drop in accuracy. Furthermore, we incorporate a color scheme for testing the level of confidence in the algorithm's inference (high = green, medium = amber, low = red). We demonstrate the speed and accuracy of our algorithm with application to both simulated and real data (Alpine cattle at 1 Hz resolution). On simulated data, our algorithm correctly identified the sites of interest for 99% of “high confidence” paths. For the cattle data, the algorithm identified the two known sites of interest: a watering hole and a milking station. It also identified several other sites which can be related to hypothesized environmental drivers (e.g., food). Our algorithm gives an efficient method for turning a long, high‐resolution movement path into a schematic representation of broadscale decisions, allowing a direct link to existing point‐to‐point analysis techniques such as optimal foraging theory. It is encoded into an R package called SitesInterest, so should serve as a valuable tool for making sense of these increasingly large data streams.
- Subjects :
- 0106 biological sciences
Computer science
Inference
010603 evolutionary biology
01 natural sciences
03 medical and health sciences
biologging
Representation (mathematics)
ComputingMilieux_MISCELLANEOUS
Ecology, Evolution, Behavior and Systematics
Original Research
030304 developmental biology
Nature and Landscape Conservation
2. Zero hunger
0303 health sciences
Ecology
Movement (music)
Data stream mining
Schematic
15. Life on land
Resolution (logic)
animal movement
high‐resolution data
Color scheme
[SDE]Environmental Sciences
Path (graph theory)
movement ecology
site fidelity
[SDE.BE]Environmental Sciences/Biodiversity and Ecology
Algorithm
Subjects
Details
- ISSN :
- 20457758 and 27307182
- Volume :
- 9
- Database :
- OpenAIRE
- Journal :
- Ecology and Evolution
- Accession number :
- edsair.doi.dedup.....7bb9105c9c8d7f587390b5e320ab84f5
- Full Text :
- https://doi.org/10.1002/ece3.4721