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An 18-gene signature based on glucose metabolism and DNA methylation improves prognostic prediction for urinary bladder cancer
- Source :
- Genomics. 113:896-907
- Publication Year :
- 2021
- Publisher :
- Elsevier BV, 2021.
-
Abstract
- Background Glucose metabolism and DNA methylation play important roles in cancers. We aimed to identify glucose metabolism-related genes that were DNA methylation associated to establish a prognostic signature of bladder cancer (BLCA). Methods With BLCA sample transcriptome data from The Cancer Genome Atlas (TCGA) and methylation data from TCGA 450 K microarray, glucose metabolism-related genes associated to prognosis and DNA methylation were identified and a prognostic signature was established. GSEA and WGCNA analysis were performed and two genes, UCHL1 and PYCR1, were selected for functional validations. Results 18 target genes were identified and the signature based on them was considered an effective and independent prognostic factor. Several pathways were enriched in the high-risk group by GSEA and three modules of genes were identified by WGCNA. UCHL1 and PYCR1 proliferated proliferation, migration and invasion ability of bladder cancer cells. Conclusions The 18-gene signature is an independent prognostic factor for bladder cancer patients.
- Subjects :
- 0106 biological sciences
Microarray
Carbohydrate metabolism
Biology
01 natural sciences
Transcriptome
03 medical and health sciences
Cell Movement
Cell Line, Tumor
Biomarkers, Tumor
Genetics
medicine
Humans
Gene
Cell Proliferation
030304 developmental biology
0303 health sciences
Bladder cancer
Carcinoma
Methylation
DNA Methylation
Gene signature
Prognosis
medicine.disease
Glucose
Urinary Bladder Neoplasms
DNA methylation
Cancer research
Pyrroline Carboxylate Reductases
Ubiquitin Thiolesterase
010606 plant biology & botany
Subjects
Details
- ISSN :
- 08887543
- Volume :
- 113
- Database :
- OpenAIRE
- Journal :
- Genomics
- Accession number :
- edsair.doi.dedup.....7a3ee3a12096f46b338e94474bda40b8