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An 18-gene signature based on glucose metabolism and DNA methylation improves prognostic prediction for urinary bladder cancer

Authors :
Tianshui Sun
Chuize Kong
Zhe Zhang
Jianbin Bi
Zhuonan Liu
Source :
Genomics. 113:896-907
Publication Year :
2021
Publisher :
Elsevier BV, 2021.

Abstract

Background Glucose metabolism and DNA methylation play important roles in cancers. We aimed to identify glucose metabolism-related genes that were DNA methylation associated to establish a prognostic signature of bladder cancer (BLCA). Methods With BLCA sample transcriptome data from The Cancer Genome Atlas (TCGA) and methylation data from TCGA 450 K microarray, glucose metabolism-related genes associated to prognosis and DNA methylation were identified and a prognostic signature was established. GSEA and WGCNA analysis were performed and two genes, UCHL1 and PYCR1, were selected for functional validations. Results 18 target genes were identified and the signature based on them was considered an effective and independent prognostic factor. Several pathways were enriched in the high-risk group by GSEA and three modules of genes were identified by WGCNA. UCHL1 and PYCR1 proliferated proliferation, migration and invasion ability of bladder cancer cells. Conclusions The 18-gene signature is an independent prognostic factor for bladder cancer patients.

Details

ISSN :
08887543
Volume :
113
Database :
OpenAIRE
Journal :
Genomics
Accession number :
edsair.doi.dedup.....7a3ee3a12096f46b338e94474bda40b8