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Shewanella indica sp. nov., isolated from sediment of the Arabian Sea
- Source :
- International journal of systematic and evolutionary microbiology. 61(Pt 9)
- Publication Year :
- 2010
-
Abstract
- A Gram-negative, facultatively anaerobic, rod-shaped, catalase- and oxidase-positive bacterium, motile by means of a single polar flagellum and designated strain KJW27T, was isolated from the marine sediment of Karwar jetty, west coast of India. The strain was β-haemolytic and grew with 0–10 % (w/v) NaCl, at 10–45 °C and at pH 6.5–10, with optimum growth with 2 % (w/v) NaCl, at 37 °C and at pH 7.5. The major fatty acids were iso-C15 : 0 (22.2 %), C17 : 1ω8c (21 %), summed feature 3 (comprising C16 : 1ω7c and/or C16:1ω6c; 10.2 %), C16 : 0 (7.1 %), iso-C13 : 0 (5.6 %) and C17 : 0 (4.4 %). The DNA G+C content was 51.2 mol%. Phylogenetic analysis based on 16S rRNA and gyrB gene sequences showed that strain KJW27T forms a lineage within the genus Shewanella and is closely related to Shewanella algae ATCC 51192T (98.8 %), Shewanella haliotis DW01T (98.8 %) and Shewanella chilikensis JC5T (98.2 %). Sequence identity with other members of this genus ranges from 92.2 to 96.4 %. The DNA–DNA relatedness of strain KJW27T with S. algae ATCC 51192T, S. haliotis DW01T and S. chilikensis JC5T was 52, 44 and 33 %, respectively. The phenotypic, genotypic and DNA–DNA relatedness data indicate that strain KJW27T should be distinguished from S. algae ATCC 51192T, S. haliotis DW01T and S. chilikensis JC5T. On the basis of the data presented in this study, strain KJW27T represents a novel species, for which the name Shewanella indica sp. nov. is proposed. The type strain is KJW27T ( = KCTC 23171T = BCC 41031T = NCIM 5388T).
- Subjects :
- DNA, Bacterial
Shewanella
food.ingredient
Molecular Sequence Data
India
Shewanella algae
Sodium Chloride
Microbiology
DNA, Ribosomal
Hemolysin Proteins
food
Algae
RNA, Ribosomal, 16S
Shewanella haliotis
Botany
Cluster Analysis
Seawater
Haliotis
Anaerobiosis
Ecology, Evolution, Behavior and Systematics
Phylogeny
Base Composition
biology
Strain (chemistry)
Fatty Acids
Temperature
Nucleic Acid Hybridization
General Medicine
Sequence Analysis, DNA
Ribosomal RNA
Hydrogen-Ion Concentration
16S ribosomal RNA
biology.organism_classification
Catalase
Aerobiosis
Bacterial Typing Techniques
DNA Gyrase
Flagella
Oxidoreductases
Bacteria
Locomotion
Subjects
Details
- ISSN :
- 14665034
- Volume :
- 61
- Issue :
- Pt 9
- Database :
- OpenAIRE
- Journal :
- International journal of systematic and evolutionary microbiology
- Accession number :
- edsair.doi.dedup.....7a2a108c1136a0ab5d4a90db358caab4