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Direct Observation of T4 Lysozyme Hinge-Bending Motion by Fluorescence Correlation Spectroscopy
- Publication Year :
- 2012
- Publisher :
- The Biophysical Society, 2012.
-
Abstract
- Bacteriophage T4 Lysozyme (T4L) catalyzes the hydrolysis of the peptidoglycan layer of the bacterial cell wall late in the infection cycle. It has long been postulated that equilibrium dynamics enable substrate access to the active site located at the interface between the N- and C-terminal domains. Crystal structures of WT-T4L and point mutants captured a range of conformations that differ by the hinge-bending angle between the two domains. Evidence of equilibrium between open and closed conformations in solution was gleaned from distance measurements between the two domains but the nature of the equilibrium and the timescale of the underlying motion have not been investigated. Here, we used fluorescence fluctuation spectroscopy to directly detect T4L equilibrium conformational fluctuations in solution. For this purpose, Tetramethylrhodamine probes were introduced at pairs of cysteines in regions of the molecule that undergo relative displacement upon transition from open to closed conformations. Correlation analysis of Tetramethylrhodamine intensity fluctuations reveals hinge-bending motion that changes the relative distance and orientation of the N- and C-terminal domains with ≅15 μs relaxation time. That this motion involves interconversion between open and closed conformations was further confirmed by the dampening of its amplitude upon covalent substrate trapping. In contrast to the prevalent two-state model of T4L equilibrium, molecular brightness and number of particles obtained from cumulant analysis suggest that T4L populates multiple intermediate states, consistent with the wide range of hinge-bending angles trapped in the crystal structure of T4L mutants.
- Subjects :
- Movement
Biophysics
Fluorescence correlation spectroscopy
Crystal structure
Molecular Dynamics Simulation
010402 general chemistry
01 natural sciences
Protein Structure, Secondary
03 medical and health sciences
Molecular dynamics
Protein structure
Molecule
Bacteriophage T4
Spectroscopy
030304 developmental biology
0303 health sciences
Quantitative Biology::Biomolecules
biology
Chemistry
Dynamics (mechanics)
Active site
0104 chemical sciences
Protein Structure, Tertiary
Crystallography
Kinetics
Spectrometry, Fluorescence
Chemical physics
biology.protein
Muramidase
Proteins and Nucleic Acids
Subjects
Details
- Language :
- English
- Database :
- OpenAIRE
- Accession number :
- edsair.doi.dedup.....78c926040e12435a107cf0de39510fe4