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Nanovirus-alphasatellite complex identified in Vicia cracca in the Rhône delta region of France

Authors :
Serge Galzi
Denis Filloux
Simona Kraberger
Romain Gallet
Philippe Roumagnac
Arvind Varsani
Darren P. Martin
Hugo Fontes
Biologie et Génétique des Interactions Plante-Parasite (UMR BGPI)
Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)-Institut National de la Recherche Agronomique (INRA)-Centre international d'études supérieures en sciences agronomiques (Montpellier SupAgro)-Institut national d’études supérieures agronomiques de Montpellier (Montpellier SupAgro)
Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)-Institut national d'enseignement supérieur pour l'agriculture, l'alimentation et l'environnement (Institut Agro)
The Biodesign Center for Fundamental and Applied Microbiomics, Center for Evolution and Medicine, School of Life Sciences
Arizona State University [Tempe] (ASU)
Centre de Coopération Internationale en Recherche Agronomique pour le Développement (Cirad)
Institut de recherche pour la conservation des zones humides méditerranéennes
University of Cape Town
Structural Biology Research Unit, Department of Clinical Laboratory Sciences
National Research Foundation of South Africa
EU : PIOF-GA-2013-622571
Source :
Archives of Virology, Archives of Virology, Springer Verlag, 2018, 163 (3), pp.695-700. ⟨10.1007/s00705-017-3634-4⟩
Publication Year :
2018
Publisher :
HAL CCSD, 2018.

Abstract

BGPI : équipe 2 / 7; International audience; Nanoviruses are multi-component plant-infecting single-stranded DNA viruses. Using a viral metagenomics-informed approach, a new nanovirus and two associated alphasatellite molecules have been identified in an uncultivated asymptomatic Vicia cracca plant in the Rhône region of France. This novel nanovirus genome includes eight genomic components (named DNA-R, DNA-S, DNA-M, DNA-C, DNA-N, DNA-U1, DNA-U2 and DNA-U4) and, across all components, shares < 66% pairwise sequence identity with other nanovirus genomes. The two associated alphasatellites share 62% identity with each other and < 81% identity will all other nanovirus-associated alphasatellites.

Details

Language :
English
ISSN :
03048608 and 14328798
Database :
OpenAIRE
Journal :
Archives of Virology, Archives of Virology, Springer Verlag, 2018, 163 (3), pp.695-700. ⟨10.1007/s00705-017-3634-4⟩
Accession number :
edsair.doi.dedup.....76fa969e7ae90c8fd51992bf88e614ad
Full Text :
https://doi.org/10.1007/s00705-017-3634-4⟩