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Theoretical 57Fe Mössbauer Spectroscopy for Structure Elucidation of [Fe] Hydrogenase Active Site Intermediates
- Source :
- Inorg. Chem.
- Publication Year :
- 2013
-
Abstract
- [Fe] hydrogenase is a hydrogen activating enzyme that features a monoiron active site, which can be well characterized by Mössbauer spectroscopy. Mössbauer spectra have been measured of the CO and CN(-) inhibited species as well as under turnover conditions [Shima, S. et al., J. Am. Chem. Soc., 2005, 127, 10430]. This study presents calculated Mössbauer parameters for various active-site models of [Fe] hydrogenase to provide structural information about the species observed in experiment. Because theoretical Mössbauer spectroscopy requires the parametrization of observables from first-principles calculations (i.e., electric-field gradients and contact densities) to the experimental observables (i.e., quadrupole splittings and isomer shifts), nonrelativistic and relativistic density functional theory methods are parametrized against a reference set of Fe complexes specifically selected for the application to the Fe center in [Fe] hydrogenase. With this methodology, the measured parameters for the CO and CN(-) inhibited complexes can be reproduced. Evidence for the protonation states of the hydroxyl group in close proximity to the active site and for the thiolate ligand, which could participate in proton transfer, is obtained. The unknown resting state measured in the presence of the substrate and under pure H2 atmosphere is identified to be a water-coordinated complex. Consistent with previous assignments based on infrared and X-ray absorption near-edge spectroscopy, all measured Mössbauer data can be reproduced with the active site's iron atom being in oxidation state +2.
- Subjects :
- Iron-Sulfur Proteins
Models, Molecular
Hydrogenase
Hydrogen
chemistry.chemical_element
010402 general chemistry
01 natural sciences
Spectral line
Inorganic Chemistry
Spectroscopy, Mossbauer
Computational chemistry
Catalytic Domain
Mössbauer spectroscopy
Physical and Theoretical Chemistry
biology
010405 organic chemistry
Chemistry
Active site
0104 chemical sciences
(Fe) hydrogenase
Quadrupole
biology.protein
Quantum Theory
Physical chemistry
Density functional theory
Subjects
Details
- Volume :
- 52
- Database :
- OpenAIRE
- Journal :
- Inorg. Chem.
- Accession number :
- edsair.doi.dedup.....751f56a764ebc217dfd8b91569ebcb85
- Full Text :
- https://doi.org/10.1021/ic4021349