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Non-parametric directionality analysis – Extension for removal of a single common predictor and application to time series
- Source :
- Journal of Neuroscience Methods. 268:87-97
- Publication Year :
- 2016
- Publisher :
- Elsevier BV, 2016.
-
Abstract
- BACKGROUND: The ability to infer network structure from multivariate neuronal signals is central to computational neuroscience. Directed network analyses typically use parametric approaches based on auto-regressive (AR) models, where networks are constructed from estimates of AR model parameters. However, the validity of using low order AR models for neurophysiological signals has been questioned. A recent article introduced a non-parametric approach to estimate directionality in bivariate data, non-parametric approaches are free from concerns over model validity. NEW METHOD: We extend the non-parametric framework to include measures of directed conditional independence, using scalar measures that decompose the overall partial correlation coefficient summatively by direction, and a set of functions that decompose the partial coherence summatively by direction. A time domain partial correlation function allows both time and frequency views of the data to be constructed. The conditional independence estimates are conditioned on a single predictor. RESULTS: The framework is applied to simulated cortical neuron networks and mixtures of Gaussian time series data with known interactions. It is applied to experimental data consisting of local field potential recordings from bilateral hippocampus in anaesthetised rats. COMPARISON WITH EXISTING METHOD(S): The framework offers a non-parametric approach to estimation of directed interactions in multivariate neuronal recordings, and increased flexibility in dealing with both spike train and time series data. CONCLUSIONS: The framework offers a novel alternative non-parametric approach to estimate directed interactions in multivariate neuronal recordings, and is applicable to spike train and time series data.
- Subjects :
- 0301 basic medicine
Time Factors
Computer science
Spike train
Models, Neurological
Action Potentials
Machine learning
computer.software_genre
Hippocampus
03 medical and health sciences
0302 clinical medicine
Directionality, Partial Coherence, Non parametric, Time series, Point process, Conditional independence,Granger causality
Animals
Computer Simulation
Time domain
Time series
Partial correlation
Parametric statistics
Cerebral Cortex
Neurons
Kainic Acid
Quantitative Biology::Neurons and Cognition
business.industry
General Neuroscience
Nonparametric statistics
Signal Processing, Computer-Assisted
Rats
Disease Models, Animal
030104 developmental biology
Epilepsy, Temporal Lobe
Autoregressive model
Conditional independence
Data Interpretation, Statistical
Multivariate Analysis
Artificial intelligence
business
Algorithm
computer
Algorithms
Software
030217 neurology & neurosurgery
Subjects
Details
- ISSN :
- 01650270 and 1872678X
- Volume :
- 268
- Database :
- OpenAIRE
- Journal :
- Journal of Neuroscience Methods
- Accession number :
- edsair.doi.dedup.....73ea78ed4564738ff6315924feeaf76e
- Full Text :
- https://doi.org/10.1016/j.jneumeth.2016.05.008