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Nearest-cell: a fast and easy tool for locating crystal matches in the PDB

Authors :
J.M. Diprose
V. Ramraj
Robert Esnouf
Gwyndaf Evans
Source :
Acta Crystallographica Section D: Biological Crystallography
Publication Year :
2012
Publisher :
International Union of Crystallography (IUCr), 2012.

Abstract

A fast and easy tool to locate unit-cell matches in the PDB is described.<br />When embarking upon X-ray diffraction data collection from a potentially novel macromolecular crystal form, it can be useful to ascertain whether the measured data reflect a crystal form that is already recorded in the Protein Data Bank and, if so, whether it is part of a large family of related structures. Providing such information to crystallographers conveniently and quickly, as soon as the first images have been recorded and the unit cell characterized at an X-ray beamline, has the potential to save time and effort as well as pointing to possible search models for molecular replacement. Given an input unit cell, and optionally a space group, Nearest-cell rapidly scans the Protein Data Bank and retrieves near-matches.

Details

ISSN :
09074449
Volume :
68
Database :
OpenAIRE
Journal :
Acta Crystallographica Section D Biological Crystallography
Accession number :
edsair.doi.dedup.....73d83d669ce10fc5e05b23fa92379dcd