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Nearest-cell: a fast and easy tool for locating crystal matches in the PDB
- Source :
- Acta Crystallographica Section D: Biological Crystallography
- Publication Year :
- 2012
- Publisher :
- International Union of Crystallography (IUCr), 2012.
-
Abstract
- A fast and easy tool to locate unit-cell matches in the PDB is described.<br />When embarking upon X-ray diffraction data collection from a potentially novel macromolecular crystal form, it can be useful to ascertain whether the measured data reflect a crystal form that is already recorded in the Protein Data Bank and, if so, whether it is part of a large family of related structures. Providing such information to crystallographers conveniently and quickly, as soon as the first images have been recorded and the unit cell characterized at an X-ray beamline, has the potential to save time and effort as well as pointing to possible search models for molecular replacement. Given an input unit cell, and optionally a space group, Nearest-cell rapidly scans the Protein Data Bank and retrieves near-matches.
- Subjects :
- crystal matches
Nearest-cell
Protein Conformation
Short Communications
Protein Data Bank (RCSB PDB)
Mineralogy
Crystallography, X-Ray
010402 general chemistry
01 natural sciences
Crystal
03 medical and health sciences
Protein Data Bank
Structural Biology
Databases, Protein
030304 developmental biology
Physics
0303 health sciences
Data collection
Proteins
General Medicine
computer.file_format
0104 chemical sciences
Search model
computer
Algorithm
Algorithms
Subjects
Details
- ISSN :
- 09074449
- Volume :
- 68
- Database :
- OpenAIRE
- Journal :
- Acta Crystallographica Section D Biological Crystallography
- Accession number :
- edsair.doi.dedup.....73d83d669ce10fc5e05b23fa92379dcd