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Trapping and structural characterisation of a covalent intermediate in vitamin B 6 biosynthesis catalysed by the Pdx1 PLP synthase

Authors :
S.E. Ealick
Matthew J. Rodrigues
Antoine Royant
Nitai Giri
Rachel Bolton
Tadhg P. Begley
Yang Zhang
Ivo Tews
Gwyndaf Evans
Biological Sciences, Institute for Life Sciences, University of Southampton
DIAMOND Light source
Department of Chemistry, Texas A&M University, College Station, Texas 77843, USA.
University of Texas
Institut de biologie structurale (IBS - UMR 5075)
Centre National de la Recherche Scientifique (CNRS)-Institut de Recherche Interdisciplinaire de Grenoble (IRIG)
Direction de Recherche Fondamentale (CEA) (DRF (CEA))
Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Direction de Recherche Fondamentale (CEA) (DRF (CEA))
Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Commissariat à l'énergie atomique et aux énergies alternatives (CEA)-Université Grenoble Alpes (UGA)
European Synchrotron Radiation Facility (ESRF)
Department of Chemistry and Chemical Biology, Cornell University
Source :
RSC Chemical Biology, RSC Chemical Biology, 2022, 3 (2), pp.227-230. ⟨10.1039/D1CB00160D⟩, RSC Chemical Biology, Royal Society of Chemistry, In press, ⟨10.1039/D1CB00160D⟩, 'RSC Chemical Biology ', vol: 3, pages: 227-230 (2022)
Publication Year :
2022
Publisher :
HAL CCSD, 2022.

Abstract

International audience; The Pdx1 enzyme catalyses condensation of two carbohydrates and ammonia to form pyridoxal 5-phosphate (PLP) via an imine relay mechanism of carbonyl intermediates. The I333 intermediate characterised here using structural, UV-vis absorption spectroscopy and mass spectrometry analyses rationalises stereoselective deprotonation and subsequent substrate assisted phosphate elimination, central to PLP biosynthesis.

Details

Language :
English
ISSN :
26330679
Database :
OpenAIRE
Journal :
RSC Chemical Biology, RSC Chemical Biology, 2022, 3 (2), pp.227-230. ⟨10.1039/D1CB00160D⟩, RSC Chemical Biology, Royal Society of Chemistry, In press, ⟨10.1039/D1CB00160D⟩, 'RSC Chemical Biology ', vol: 3, pages: 227-230 (2022)
Accession number :
edsair.doi.dedup.....72e4f14ccd197150f51084d9747a1f9e
Full Text :
https://doi.org/10.1039/D1CB00160D⟩