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Mutation Detection in Patients with Retinal Dystrophies Using Targeted Next Generation Sequencing

Authors :
John R. Heckenlively
Tim M. Strom
Anja K. Mayer
David G. Birch
Charlotte Reiff
Christina Kamme
Balázs Varsányi
Sten Andréasson
Antje Bernd
Thomas Rosenberg
Nicole Weisschuh
Klaus Rohrschneider
Nicola Glöckle
Rita Vámos
Günther Rudolph
Ulrich Kellner
Pietro Maffei
Susanne Kohl
Erdmute Kunstmann
Bernd Wissinger
Christian P. Hamel
Max Schubach
Samuel G. Jacobson
Richard G. Weleber
Centre Hospitalier Régional Universitaire [Montpellier] (CHRU Montpellier)
Institut des Neurosciences de Montpellier - Déficits sensoriels et moteurs (INM)
Institut National de la Santé et de la Recherche Médicale (INSERM)-Université de Montpellier (UM)
Source :
PLoS ONE, PLoS ONE, Vol 11, Iss 1, p e0145951 (2016), PLoS ONE, Public Library of Science, 2016, 11 (1), pp.e0145951. ⟨10.1371/journal.pone.0145951⟩, PLoS ONE 11:e0145951 (2016)
Publication Year :
2016
Publisher :
Public Library of Science, 2016.

Abstract

International audience; Retinal dystrophies (RD) constitute a group of blinding diseases that are characterized by clinical variability and pronounced genetic heterogeneity. The different nonsyndromic and syndromic forms of RD can be attributed to mutations in more than 200 genes. Consequently, next generation sequencing (NGS) technologies are among the most promising approaches to identify mutations in RD. We screened a large cohort of patients comprising 89 independent cases and families with various subforms of RD applying different NGS platforms. While mutation screening in 50 cases was performed using a RD gene capture panel, 47 cases were analyzed using whole exome sequencing. One family was analyzed using whole genome sequencing. A detection rate of 61% was achieved including mutations in 34 known and two novel RD genes. A total of 69 distinct mutations were identified, including 39 novel mutations. Notably, genetic findings in several families were not consistent with the initial clinical diagnosis. Clinical reassessment resulted in refinement of the clinical diagnosis in some of these families and confirmed the broad clinical spectrum associated with mutations in RD genes.

Details

Language :
English
ISSN :
19326203
Volume :
11
Issue :
1
Database :
OpenAIRE
Journal :
PLoS ONE
Accession number :
edsair.doi.dedup.....72c1d9a41aba502697d031fab72fdbf1