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Serine 51 residue of Citrobacter freundii tyrosine phenol-lyase assists in C-α-proton abstraction and transfer in the reaction with substrate
- Source :
- Biochimie. 147
- Publication Year :
- 2017
-
Abstract
- In the spatial structure of tyrosine phenol-lyase, the Ser51 residue is located in the active site of the enzyme. The replacement of Ser51 with Ala by site-directed mutagenesis led to a decrease of the kcat/Km parameter for reactions with l -tyrosine and 3-fluoro- l -tyrosine by three orders of magnitude, compared to wild type enzyme. For the elimination reactions of S-alkylcysteines, the values of kcat/Km decreased by an average of two orders of magnitude. The results of spectral studies of the mutant enzyme gave evidence for a considerable change of the chiral properties of the active site as a result of the replacement. Fast kinetic studies for the complexes of the mutant form with competitive inhibitors allowed us to conclude that the Ser51 residue interacts with the side chain amino group of Lys257 at the stage of C-α-proton abstraction. This interaction ensures the correct orientation of the side chain of Lys257 accepting the C-α-proton of the external aldimine and stabilizes its ammonium form. Also, it is probable that Ser51 takes part in formation of a chain of hydrogen bonds which is necessary to perform the transfer of the C-α-proton to the C-4′-position of the leaving phenol group in the reaction with the natural substrate.
- Subjects :
- 0301 basic medicine
Stereochemistry
Phenylalanine
Tyrosine phenol-lyase
Biochemistry
03 medical and health sciences
Residue (chemistry)
Elimination reaction
Methionine
Protein Domains
Side chain
Serine
Enzyme kinetics
Tyrosine
Tyrosine Phenol-Lyase
030102 biochemistry & molecular biology
biology
Chemistry
Active site
General Medicine
biology.organism_classification
Citrobacter freundii
Kinetics
030104 developmental biology
Amino Acid Substitution
biology.protein
Protein Multimerization
Protons
Subjects
Details
- ISSN :
- 16386183
- Volume :
- 147
- Database :
- OpenAIRE
- Journal :
- Biochimie
- Accession number :
- edsair.doi.dedup.....7256843e274d46497cd0f1371169e693