Additional File 1

Figure S1. The result of mouse embryonic dental epithelium cell at E13.5 with only the mouse PPI background pathway data. Figure S2. The result of newborn mouse lens epithelium cell with only the mouse PPI background pathway data. Figure S3. The result of human PSC-derived ROR1+ cell (lens epithelium cell-like) with only the human PPI background pathway data. Figure S4. The result of newborn mouse lens fiber cell with only the mouse PPI background pathway data. Table S1. False positive rate calculation for SPAGI method of randomly assigns gene expression values of new born mouse lens epithelial cell and mouse tooth epithelial cell at embryonic day E13.5. Table S2. SPAGI test result for randomly assign gene expression values of new born mouse lens epithelial cell and mouse tooth epithelial cell at embryonic day E13.5. Table S3. Identification of known pathways by SPAGI and GO analysis methods. Table S4. Summary of known pathways identification by SPAGI and GO methods for randomly assigns genes of mouse lens epithelial cell. Table S5. Summary of known pathways identification by SPAGI and GO methods of randomly assigns genes for mouse tooth epithelial cell. Table S6. False positive rate of SPAGI and GO analysis method for known pathways. (PDF 658 kb)