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FlyNets and GIF‐DB, two internet databases for molecular interactions in Drosophila melanogaster

Authors :
Florence Horn
Catherine Sanchez
Elodie Mohr
Bernard Bellon
Laurence Röder
Violaine Pillet
Bernard Jacq
Florence Janody
Laboratoire de génétique et physiologie du développement (LGPD)
Université de la Méditerranée - Aix-Marseille 2-Institut National de la Santé et de la Recherche Médicale (INSERM)-Centre National de la Recherche Scientifique (CNRS)
Spinelli, Lionel
Source :
Nucleic Acids Research, Nucleic Acids Research, Oxford University Press, 1998, 26 (1), pp.89--93, Nucleic Acids Research, 1998, 26 (1), pp.89--93
Publication Year :
1998
Publisher :
HAL CCSD, 1998.

Abstract

International audience; GIF‐DB and FlyNets are two WWW databases describing molecular (protein‐DNA, protein‐RNA and protein‐protein) interactions occuring in the fly Drosophila melanogaster (http://gifts.univ‐mrs.fr/GIFTS\ₕome\ₚage.html ). GIF‐DB is a specialised database which focuses on molecular interactions involved in the process of embryonic pattern formation, whereas FlyNets is a new and more general database, the long‐term goal of which is to report on any published molecular interaction occuring in the fly. The information content of both databases is distributed in specific lines arranged into an EMBL‐ (or GenBank‐) like format. These databases achieve a high level of integration with other databases such as FlyBase, EMBL, GenBank and SWISS‐PROT through numerous hyperlinks. In addition, we also describe SOS‐DGDB, a new collection of annotated Drosophila gene sequences, in which binding sites for regulatory proteins are directly visible on the DNA primary sequence and hyperlinked both to GIF‐DB and TRANSFAC database entries.

Details

Language :
English
ISSN :
03051048 and 13624962
Database :
OpenAIRE
Journal :
Nucleic Acids Research, Nucleic Acids Research, Oxford University Press, 1998, 26 (1), pp.89--93, Nucleic Acids Research, 1998, 26 (1), pp.89--93
Accession number :
edsair.doi.dedup.....709831591f42d18224279babb69a733e