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A systems biology view of wood formation in Eucalyptus grandis trees submitted to different potassium and water regimes
- Source :
- New Phytologist, New Phytologist, Wiley, 2019, 223 (2), pp.766-782. ⟨10.1111/nph.15802⟩, Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual), Universidade de São Paulo (USP), instacron:USP
- Publication Year :
- 2019
- Publisher :
- HAL CCSD, 2019.
-
Abstract
- International audience; Wood production in fast-growing Eucalyptus grandis trees is highly dependent on both potassium (K) fertilization and water availability but the molecular processes underlying wood formation in response to the combined effects of these two limiting factors remain unknown. E. grandis trees were submitted to four combinations of K-fertilization and water supply. Weighted gene co-expression network analysis and MixOmics-based co-regulation networks were used to integrate xylem transcriptome, metabolome and complex wood traits. Func- tional characterization of a candidate gene was performed in transgenic E. grandis hairy roots. This integrated network-based approach enabled us to identify meaningful biological pro- cesses and regulators impacted by K-fertilization and/or water limitation. It revealed that modules of co-regulated genes and metabolites strongly correlated to wood complex traits are in the heart of a complex trade-off between biomass production and stress responses. Nested in these modules, potential new cell-wall regulators were identified, as further con- firmed by the functional characterization of EgMYB137. These findings provide new insights into the regulatory mechanisms of wood formation under stressful conditions, pointing out both known and new regulators co-opted by K-fertilization and/or water limitation that may potentially promote adaptive wood traits.
- Subjects :
- 0106 biological sciences
0301 basic medicine
K50 - Technologie des produits forestiers
SECA
Physiology
tree physiology
Gene regulatory network
Biomass
Plant Science
drought
01 natural sciences
Trees
transcriptomics
[SDV.SA.SF]Life Sciences [q-bio]/Agricultural sciences/Silviculture, forestry
Cell Wall
Gene Regulatory Networks
Plant Proteins
Eucalyptus
Wood production
wood traits
Systems Biology
system biology
potassium
metabolomics
Phenotype
Propriété technologique
Metabolome
Besoin en eau
gene network
Secondary cell wall
secondary cell wall
wood
Eucalyptus grandis
abiotic stress
F60 - Physiologie et biochimie végétale
Biology
03 medical and health sciences
Bois
Metabolomics
Xylem
[SDV.BBM.GTP]Life Sciences [q-bio]/Biochemistry, Molecular Biology/Genomics [q-bio.GN]
Botany
[SDV.BV]Life Sciences [q-bio]/Vegetal Biology
[SDV.BBM]Life Sciences [q-bio]/Biochemistry, Molecular Biology
Abiotic stress
Water
15. Life on land
saccharification
030104 developmental biology
Transcriptome
Transcription Factors
010606 plant biology & botany
F04 - Fertilisation
Subjects
Details
- Language :
- English
- ISSN :
- 0028646X and 14698137
- Database :
- OpenAIRE
- Journal :
- New Phytologist, New Phytologist, Wiley, 2019, 223 (2), pp.766-782. ⟨10.1111/nph.15802⟩, Repositório Institucional da USP (Biblioteca Digital da Produção Intelectual), Universidade de São Paulo (USP), instacron:USP
- Accession number :
- edsair.doi.dedup.....701679f9f6826bd553606f1a79eff689
- Full Text :
- https://doi.org/10.1111/nph.15802⟩