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Example FIB-SEM datasets for segmentation, spatial analysis, and visualization of volume electron microscopy datasets

Authors :
Andreas Müller
Harald F. Hess
C Shan Xu
Song Pang
Susanne Kretschmar
Carla Münster
Thomas Kurth
Florian Jug
Deborah Schmidt
Martin Weigert
Michele Solimena
Publication Year :
2023
Publisher :
Zenodo, 2023.

Abstract

This record contains demo FIB-SEM raw data and segmentation masks for the protocol paper: Müller et al. A modular protocol for segmentation, spatial analysis, and visualization of volume electron microscopy datasets It contains - `high_c1_source.tif` raw FIB-SEM stack (16nm^3 resolution) of a mouse pancreatic cell - `data_golgi` volumetric training data for golgi segmentation - `data_granules` volumetric training data for secretory granule segmentation - `high_c1` input folder with segmentation masks for cellsketch - `mycell.n5` input folder for spatial analysis and visualization &nbsp

Details

Database :
OpenAIRE
Accession number :
edsair.doi.dedup.....6fe161833281c151d8553a91b9552109
Full Text :
https://doi.org/10.5281/zenodo.8114391