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Structure and tailspike glycosidase machinery of ORF212 from E. coli O157:H7 phage CBA120 (TSP3)
- Source :
- Scientific Reports, Scientific Reports, Vol 9, Iss 1, Pp 1-11 (2019)
- Publication Year :
- 2019
- Publisher :
- Nature Publishing Group UK, 2019.
-
Abstract
- Bacteriophage tailspike proteins mediate virion absorption through reversible primary receptor binding, followed by lipopolysaccharide or exopolysaccharide degradation. The Escherichia coli O157:H7 bacteriophage CBA120 genome encodes four distinct tailspike proteins, annotated as ORFs 210 through 213. Previously, we reported the crystal structure of ORF210 (TSP1). Here we describe the crystal structure of ORF212 (TSP3) determined at 1.85 Å resolution. As observed with other tailspike proteins, TSP3 assembles into a trimer. Each subunit of TSP3 has an N-terminal head domain that is structurally similar to that of TSP1, consistent with their high amino acid sequence identity. In contrast, despite sharing a β-helix fold, the overall structure of the C-terminal catalytic domain of TSP3 is quite different when compared to TSP1. The TSP3 structure suggests that the glycosidase active site resides in a cleft at the interface between two adjacent subunits where three acidic residues, Glu362 and Asp383 on one subunit, and Asp426 on a second subunit, are located in close proximity. Comparing the glycosidase activity of wild-type TSP3 to various point mutants revealed that catalysis requires the carboxyl groups of Glu362 and Asp426, and not of Asp383, confirming the enzyme employs two carboxyl groups to degrade lippopolysaccharide using an acid/base mechanism.
- Subjects :
- 0301 basic medicine
Models, Molecular
Glycoside Hydrolases
Viral protein
Stereochemistry
Protein Conformation
Protein subunit
Mutant
lcsh:Medicine
medicine.disease_cause
Crystallography, X-Ray
Escherichia coli O157
Biochemistry
Article
Bacteriophage
03 medical and health sciences
0302 clinical medicine
Protein structure
Catalytic Domain
Enzyme Stability
medicine
Humans
Bacteriophages
lcsh:Science
Escherichia coli
Peptide sequence
Escherichia coli Infections
X-ray crystallography
Multidisciplinary
biology
Chemistry
lcsh:R
Active site
Viral Tail Proteins
biology.organism_classification
030104 developmental biology
Proteolysis
biology.protein
lcsh:Q
030217 neurology & neurosurgery
Subjects
Details
- Language :
- English
- ISSN :
- 20452322
- Volume :
- 9
- Database :
- OpenAIRE
- Journal :
- Scientific Reports
- Accession number :
- edsair.doi.dedup.....6f7b1ac6600ec36e235d609931f79f5c