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A new molecular classification to drive precision treatment strategies in primary Sjögren's syndrome

Authors :
Soret, Perrine
Le Dantec, Christelle
Desvaux, Emiko
Foulquier, Nathan
Chassagnol, Bastien
Hubert, Sandra
Jamin, Christophe
Barturen, Guillermo
Desachy, Guillaume
Devauchelle-Pensec, Valérie
Boudjeniba, Cheïma
Cornec, Divi
Saraux, Alain
Jousse-Joulin, Sandrine
Barbarroja, Nuria
Rodríguez-Pintó, Ignasi
De Langhe, Ellen
Beretta, Lorenzo
Chizzolini, Carlo
Kovács, László
Witte, Torsten
Bettacchioli, Eléonore
Buttgereit, Anne
Makowska, Zuzanna
Lesche, Ralf
Borghi, Maria Orietta
Martin, Javier
Courtade-Gaiani, Sophie
Xuereb, Laura
Guedj, Mickaël
Moingeon, Philippe
Alarcón-Riquelme, Marta
Laigle, Laurence
Pers, Jacques-Olivier
Vigone, Barbara
Lauwerys, Bernard
Maudoux, Anne-Lise
Vasconcelos, Carlos
Tavares, Ana
Faria, Raquel
Brandão, Mariana
Campar, Ana
Marinho, António
Farinha, Fátima
Almeida, Isabel
Gonzalez-Gay Mantecón, Miguel Angel
Blanco Alonso, Ricardo
Corrales Martínez, Alfonso
Cervera, Ricard
Espinosa, Gerard
Lories, Rik
Hunzelmann, Nicolas
Belz, Doreen
Baerlecken, Niklas
Stummvoll, Georg
Zauner, Michael
Lehner, Michaela
Collantes, Eduardo
Ortega-Castro, Rafaela
Aguirre-Zamorano, Ma Angeles
Escudero-Contreras, Alejandro
Castro-Villegas, Ma Carmen
Jiménez Gómez, Yolanda
Ortego, Norberto
Fernández Roldán, María Concepción
Raya, Enrique
Jiménez Moleón, Inmaculada
de Ramon, Enrique
Díaz Quintero, Isabel
Meroni, Pier Luigi
Gerosa, Maria
Schioppo, Tommaso
Artusi, Carolina
Zuber, Aleksandra
Wynar, Donatienne
Balog, Attila
Deák, Magdolna
Bocskai, Márta
Dulic, Sonja
Kádár, Gabriella
Hiepe, Falk
Thiel, Silvia
Rodriguez Maresca, Manuel
López-Berrio, Antonio
Aguilar-Quesada, Rocío
Navarro-Linares, Héctor
Ioannou, Yiannis
Chamberlain, Chris
Marovac, Jacqueline
Alarcón Riquelme, Marta
Gomes Anjos, Tania
Marañón, Concepción
Le Lann, Lucas
Simon, Quentin
Rouvière, Bénédicte
Varela, Nieves
Muchmore, Brian
Dufour, Aleksandra
Alvarez, Montserrat
Cremer, Jonathan
Lopez-Pedrera, Chary
Gerl, Velia
Khodadadi, Laleh
Cheng, Qingyu
De Groof, Aurélie
Ducreux, Julie
Trombetta, Elena
Li, Tianlu
Alvarez-Errico, Damiana
Kniesch, Katja
Azevedo, Nancy
Neves, Esmeralda
Rao, Sambasiva
Jouve, Pierre-Emmanuel
Agence Nationale de la Recherche (France)
European Commission
Lymphocyte B et Auto-immunité (LBAI)
Université de Brest (UBO)-Institut Brestois Santé Agro Matière (IBSAM)
Université de Brest (UBO)-Institut National de la Santé et de la Recherche Médicale (INSERM)
CHRU Brest - Service d'Hématologie (CHU-Brest-Hemato)
Centre Hospitalier Régional Universitaire de Brest (CHRU Brest)
Cluj-Napoca Unit-The Net-Work of International Francophone Clinical Epidemiology, Iuliu Hatieganu University of Medicine and Pharmacy, Cluj-Napoca Unit-The Net-Work of International Francophone Clinical Epidemiology, Iuliu Hatieganu University of Medicine and Pharmacy, 400000 Cluj-Napoca, Romania.
Iuliu Hatieganu University of Medicine & Pharmacy
Génétique, génomique fonctionnelle et biotechnologies (UMR 1078) (GGB)
Institut Brestois Santé Agro Matière (IBSAM)
Université de Brest (UBO)-Université de Brest (UBO)-EFS-Institut National de la Santé et de la Recherche Médicale (INSERM)
University of South Florida [Tampa] (USF)
Cluj-Napoca Unit-The Net-Work of International Francophone Clinical Epidemiology, Iuliu Hatieganu University of Medicine and Pharmacy, 400000 Cluj-Napoca, Romania.
Institut de Recherches Internationales Servier [Suresnes] (IRIS)
Centre for Genomics and Oncological Reearch (GENYO)
CHRU Brest - Service de Rhumatologie (CHU - BREST - Rhumato)
Instituto Maimonides de Investigación Biomédica de Cordoba (IMIBIC)
Universidad de Córdoba [Cordoba]-Hospital Universitario Reina Sofía
Institut d'Investigacions Biomèdiques August Pi i Sunyer (IDIBAPS)
University Hospitals Leuven and Skeletal Biology and Engineering Research Center, KU Leuven, Leuven, Belgium
Maggiore Hospital, IRCCS Foundation, Milano
Department of Pathology and Immunology [Geneva, Switzerland]
University of Geneva [Switzerland]
University of Szeged [Szeged]
Clinic for Immunology and Rhematology, Hannover Medical School, Hanover, Germany
Hôpital Morvan - CHRU de Brest (CHU - BREST )
Pharmaceuticals Division Bayer Pharma Aktiengesellschaft
Università degli Studi di Milano [Milano] (UNIMI)
Instituto de Parasitología y Biomedicina 'López-Neyra' (IPBLN)
Consejo Superior de Investigaciones Científicas (CSIC)
Centre for Genomics and Oncological Research (GENYO) Pfizer, University of Granada
Università degli Studi di Milano and IRCCS Maggiore Policlinico Hospital, Mangiagalli and Regina Elena Foundation
Source :
Digital.CSIC. Repositorio Institucional del CSIC, instname, Nature Communications, Nature Communications, Nature Publishing Group, 2021, 12 (1), pp.3523. ⟨10.1038/s41467-021-23472-7⟩, Nature Communications, Vol 12, Iss 1, Pp 1-18 (2021), Dipòsit Digital de la UB, Universidad de Barcelona
Publication Year :
2021
Publisher :
Nature Publishing Group, 2021.

Abstract

There is currently no approved treatment for primary Sjögren’s syndrome, a disease that primarily affects adult women. The difficulty in developing effective therapies is -in part- because of the heterogeneity in the clinical manifestation and pathophysiology of the disease. Finding common molecular signatures among patient subgroups could improve our understanding of disease etiology, and facilitate the development of targeted therapeutics. Here, we report, in a cross-sectional cohort, a molecular classification scheme for Sjögren’s syndrome patients based on the multi-omic profiling of whole blood samples from a European cohort of over 300 patients, and a similar number of age and gender-matched healthy volunteers. Using transcriptomic, genomic, epigenetic, cytokine expression and flow cytometry data, combined with clinical parameters, we identify four groups of patients with distinct patterns of immune dysregulation. The biomarkers we identify can be used by machine learning classifiers to sort future patients into subgroups, allowing the re-evaluation of response to treatments in clinical trials.<br />Sjögren’s syndrome, a disease that primarily affects women, is poorly understood. Here, the authors combine data from a large cohort of patients and healthy controls to identify biomarkers that distinguish patient subgroups to improve our understanding of the disease and facilitate drug development.

Subjects

Subjects :
Male
Oncology
MESH: Inflammation
MESH: Flow Cytometry
Disease
DISEASE
0302 clinical medicine
Molecular classification
Databases, Genetic
MESH: Interferons
Databases, Protein
MESH: Cytokines
MESH: Middle Aged
Molecular medicine
Malalties autoimmunitàries
MESH: Polymorphism, Single Nucleotide
ASSOCIATION
Flow Cytometry
Pathophysiology
3. Good health
Multigene Family
Marcadors bioquímics
Cohort
Cytokines
Science & Technology - Other Topics
Epigenetics
cell cycle
MESH: Computational Biology
medicine.medical_specialty
Science
Article
General Biochemistry, Genetics and Molecular Biology
03 medical and health sciences
splicing
MESH: Cross-Sectional Studies
Rheumatology
MESH: Computer Simulation
Humans
Computer Simulation
RITUXIMAB
SIGNATURES
Autoantibodies
Science & Technology
MESH: Humans
MESH: Transcriptome
Computational Biology
MESH: Adult
DNA Methylation
Immune dysregulation
Epigenètica
Clinical trial
CLINICAL PHENOTYPES
Cross-Sectional Studies
030104 developmental biology
MESH: Sjogren's Syndrome
MESH: Genome-Wide Association Study
chronic lymphocytic leukemia
MESH: Multigene Family
MESH: Female
Biomarkers
RESPONSES
0301 basic medicine
Proteome
Autoimmune diseases
General Physics and Astronomy
medicine.disease_cause
Cohort Studies
Clinical trials
MESH: DNA Methylation
MESH: Autoantibodies
RNA-Seq
liquid chromatography-tandem mass spectrometry
MESH: Cohort Studies
MESH: Databases, Genetic
Multidisciplinary
Biochemical markers
Middle Aged
MESH: Chemokines
Multidisciplinary Sciences
MESH: Proteome
Sjogren's Syndrome
Assaigs clinics
[SDV.IMM]Life Sciences [q-bio]/Immunology
Female
Chemokines
HYDROXYCHLOROQUINE
Adult
INTERFERON
MESH: Databases, Protein
MEDLINE
Polymorphism, Single Nucleotide
MECHANISMS
Internal medicine
cell cycle, chronic lymphocytic leukemia, liquid chromatography-tandem mass spectrometry, splicing
medicine
MESH: RNA-Seq
Inflammation
030203 arthritis & rheumatology
business.industry
General Chemistry
EFFICACY
MESH: Male
MESH: Biomarkers
Interferons
Transcriptome
business
Assaigs clínics
Genome-Wide Association Study

Details

ISSN :
20411723
Database :
OpenAIRE
Journal :
Digital.CSIC. Repositorio Institucional del CSIC, instname, Nature Communications, Nature Communications, Nature Publishing Group, 2021, 12 (1), pp.3523. ⟨10.1038/s41467-021-23472-7⟩, Nature Communications, Vol 12, Iss 1, Pp 1-18 (2021), Dipòsit Digital de la UB, Universidad de Barcelona
Accession number :
edsair.doi.dedup.....6f5182e71983a3c820bc2eed151f2178