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Reexamining the origin of the directionality of myosin V
- Source :
- Proceedings of the National Academy of Sciences. 114:10426-10431
- Publication Year :
- 2017
- Publisher :
- Proceedings of the National Academy of Sciences, 2017.
-
Abstract
- The nature of the conversion of chemical energy to directional motion in myosin V is examined by careful simulations that include two complementary methods: direct Langevin Dynamics (LD) simulations with a scaled-down potential that provided a detailed time-resolved mechanism, and kinetic equations solution for the ensemble long-time propagation (based on information collected for segments of the landscape using LD simulations and experimental information). It is found that the directionality is due to the rate-limiting ADP release step rather than the potential energy of the lever arm angle. We show that the energy of the power stroke and the barriers involved in it are of minor consequence to the selectivity of forward over backward steps and instead suggest that the selective release of ADP from a postrigor myosin motor head promotes highly selective and processive myosin V. Our model is supported by different computational methods-LD simulations, Monte Carlo simulations, and kinetic equations solution-as well as by structure-based binding energy calculations.
- Subjects :
- Models, Molecular
0301 basic medicine
Protein Conformation
Myosin Type V
Monte Carlo method
Binding energy
Molecular Dynamics Simulation
010402 general chemistry
01 natural sciences
Molecular physics
Quantitative Biology::Subcellular Processes
03 medical and health sciences
Molecular dynamics
Computational chemistry
Myosin
Molecular motor
Humans
Directionality
Langevin dynamics
Multidisciplinary
Myosin Heavy Chains
Chemistry
Biological Sciences
Potential energy
0104 chemical sciences
Adenosine Diphosphate
Kinetics
030104 developmental biology
Energy Transfer
Monte Carlo Method
Subjects
Details
- ISSN :
- 10916490 and 00278424
- Volume :
- 114
- Database :
- OpenAIRE
- Journal :
- Proceedings of the National Academy of Sciences
- Accession number :
- edsair.doi.dedup.....6f088c35e4ac59870dbb40c1530df8b3