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Comment on 'Flexibility of short DNA helices with finite-length effect: From base pairs to tens of base pairs' [J. Chem. Phys. 142, 125103 (2015)]
- Source :
- The Journal of chemical physics. 155(2)
- Publication Year :
- 2021
-
Abstract
- While analyzing the persistence length of DNA atomistic simulations Wu et al. [J. Chem. Phys. 142, 125103 (2015)] introduced an empirical formula to account for the observed length-dependence. In particular they found that the persistence length increases with the distance. Here, we derive the formula by Wu et al. using a non-local twistable wormlike chain which introduces couplings between distal sites. Finally, we show that the same formula can account for the length-scale dependence of the torsional persistence length and is, in fact, applicable to any kind of polymer model with non-local couplings.
- Subjects :
- Persistence length
Physics
Flexibility (anatomy)
Base pair
General Physics and Astronomy
Length effect
DNA
Protein Structure, Secondary
chemistry.chemical_compound
medicine.anatomical_structure
chemistry
Chain (algebraic topology)
medicine
Empirical formula
Nucleic Acid Conformation
Statistical physics
Physical and Theoretical Chemistry
Base Pairing
Subjects
Details
- ISSN :
- 10897690
- Volume :
- 155
- Issue :
- 2
- Database :
- OpenAIRE
- Journal :
- The Journal of chemical physics
- Accession number :
- edsair.doi.dedup.....6c8b1b18fb876ced9b82d123cf526cdf