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Illumina next-generation sequencing reveals the complete mitochondrial genome of Psenopsis anomala (Perciformes: Centrolophidae) with phylogenetic consideration
- Source :
- Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis. 27(5)
- Publication Year :
- 2015
-
Abstract
- Using Illumina next-generation sequencing (NGS), the complete mitochondrial genome of the Psenopsis anomala was sequenced in the present study. The mitochondrial genome of P. anomala is 16,528 bp long and consists of 13 protein-coding genes, 2 rRNA genes, 22 tRNA genes, and a control region. The structure about gene order and composition of P. anomala mitochondrial genome is similar to those of most other vertebrates. The nucleotide compositions of the light strand in descending order is 29.18% of T, 27.97% of G, 27.06% of A, and 15.79% of C. With the exception of the NADH dehydrogenase subunit 6 (ND6) and eight tRNA genes, other mitochondrial genes are encoded on the heavy strand. The phylogenetic analysis by maximum-likelihood (ML) method shown that the Psenopsis anomala was closer to Peprilus triacanthus in the phylogenetic relationship.
- Subjects :
- 0301 basic medicine
Genetics
Fish Proteins
Mitochondrial DNA
Base Composition
Phylogenetic tree
Biology
Ribosomal RNA
biology.organism_classification
DNA sequencing
Perciformes
03 medical and health sciences
030104 developmental biology
Heavy strand
RNA, Transfer
RNA, Ribosomal
Genome, Mitochondrial
Animals
Anomala
Molecular Biology
Gene
Psenopsis
Phylogeny
Subjects
Details
- ISSN :
- 24701408
- Volume :
- 27
- Issue :
- 5
- Database :
- OpenAIRE
- Journal :
- Mitochondrial DNA. Part A, DNA mapping, sequencing, and analysis
- Accession number :
- edsair.doi.dedup.....6bf7b0e3b8d00e3ee50c8c02b972bb4a